Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012331A_C01 KMC012331A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567468.1| oxygen-evolving complex 25.6 kD protein, chloro... 205 5e-52
gb|AAM61572.1| unknown [Arabidopsis thaliana] 204 1e-51
ref|NP_682865.1| ORF_ID:tlr2075~similar to photosystem II oxygen... 39 0.049
ref|NP_203269.1| unknown [Epiphyas postvittana nucleopolyhedrovi... 36 0.54
ref|NP_191093.1| oxygen-evolving complex 25.6 kD protein, chloro... 35 0.70
>ref|NP_567468.1| oxygen-evolving complex 25.6 kD protein, chloroplast precursor,
putative; protein id: At4g15510.1, supported by cDNA:
12451. [Arabidopsis thaliana]
gi|13959580|sp|O23403|T215_ARATH Thylakoid lumenal 21.5
kDa protein, chloroplast precursor
gi|7485170|pir||G71419 hypothetical protein -
Arabidopsis thaliana gi|2244908|emb|CAB10329.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268298|emb|CAB78593.1| hypothetical protein
[Arabidopsis thaliana]
Length = 287
Score = 205 bits (521), Expect = 5e-52
Identities = 100/122 (81%), Positives = 113/122 (91%)
Frame = -1
Query: 670 DLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASN 491
DLG P+E GK+VL+QYLTEFMSTRLGV+R+AN+LSTSSRVADDGKLYYQVEVNIKSYA+N
Sbjct: 166 DLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANN 225
Query: 490 NELAVMPQARVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSFRVN 311
NELAVMPQ RV RLEW+RRYL+VLGVEN++LY +RLQTPE VF EEE DLRRVMDSFRV
Sbjct: 226 NELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285
Query: 310 QI 305
+I
Sbjct: 286 KI 287
>gb|AAM61572.1| unknown [Arabidopsis thaliana]
Length = 287
Score = 204 bits (518), Expect = 1e-51
Identities = 99/122 (81%), Positives = 113/122 (92%)
Frame = -1
Query: 670 DLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASN 491
DLG P+E GK+VL+QYLTEFMSTRLGV+R+AN+LSTSSRVADDGKLYYQVEVNIKSYA+N
Sbjct: 166 DLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANN 225
Query: 490 NELAVMPQARVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSFRVN 311
NELAVMPQ RV RLEW+RRYL+VLGV+N++LY +RLQTPE VF EEE DLRRVMDSFRV
Sbjct: 226 NELAVMPQDRVARLEWNRRYLAVLGVDNDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285
Query: 310 QI 305
+I
Sbjct: 286 KI 287
>ref|NP_682865.1| ORF_ID:tlr2075~similar to photosystem II oxygen-evolving complex
23K protein PsbP [Thermosynechococcus elongatus BP-1]
gi|22295802|dbj|BAC09627.1| ORF_ID:tlr2075~similar to
photosystem II oxygen-evolving complex 23K protein PsbP
[Thermosynechococcus elongatus BP-1]
Length = 183
Score = 39.3 bits (90), Expect = 0.049
Identities = 29/119 (24%), Positives = 52/119 (43%)
Frame = -1
Query: 670 DLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASN 491
+LG P+E G ++L+ + S R + +++ +S+ ADD K YY +E +
Sbjct: 82 ELGSPEEVGDRLLRNIIAPSES-----GRSSALIAATSQKADD-KTYYILEYAVTLPGDG 135
Query: 490 NELAVMPQARVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSFRV 314
N R LS + V ++Y L + PE + + E + ++ SF V
Sbjct: 136 NTAQ------------QRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 182
>ref|NP_203269.1| unknown [Epiphyas postvittana nucleopolyhedrovirus]
gi|15213225|gb|AAK85664.1| unknown [Epiphyas postvittana
nucleopolyhedrovirus]
Length = 418
Score = 35.8 bits (81), Expect = 0.54
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = -1
Query: 652 EAGKKVLKQYLTEFMS-----TRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASNN 488
+ KK LK F++ TR +R +V ++ D KL +++ N K Y +N
Sbjct: 284 DGSKKKLKLGNVMFVNMLRAGTREAIRHTIDVYYSACNYLDKSKLPFRIIGNYKGYENNY 343
Query: 487 ELAVMPQARVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRV 332
++A + A + + V + N L L + EN+FQE ++ + R+
Sbjct: 344 KMAALDFAIL---------MFVTNINNRNLKYLMMNVHENMFQELKTQVCRM 386
>ref|NP_191093.1| oxygen-evolving complex 25.6 kD protein, chloroplast precursor,
putative; protein id: At3g55330.1, supported by cDNA:
3747., supported by cDNA: gi_16930398, supported by
cDNA: gi_20453230 [Arabidopsis thaliana]
gi|9297075|sp|P82538|TL26_ARATH Thylakoid lumenal 25.6
kDa protein, chloroplast precursor
gi|11282367|pir||T47672 hypothetical protein T26I12.210
- Arabidopsis thaliana gi|7019666|emb|CAB75767.1|
putative protein [Arabidopsis thaliana]
gi|16930399|gb|AAL31885.1|AF419553_1
AT3g55330/T26I12_210 [Arabidopsis thaliana]
gi|20453231|gb|AAM19854.1| AT3g55330/T26I12_210
[Arabidopsis thaliana] gi|21593252|gb|AAM65201.1|
unknown [Arabidopsis thaliana]
Length = 230
Score = 35.4 bits (80), Expect = 0.70
Identities = 29/119 (24%), Positives = 48/119 (39%)
Frame = -1
Query: 670 DLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKLYYQVEVNIKSYASN 491
+ GPP++ + ++K+ L + L +S DGK YYQ E +
Sbjct: 135 EFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTV------ 180
Query: 490 NELAVMPQARVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSFRV 314
QAR + R L + V N Y L E +++ + L V+DSF++
Sbjct: 181 -------QAR----NYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,903,653
Number of Sequences: 1393205
Number of extensions: 11078536
Number of successful extensions: 29100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29037
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
