Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012256A_C01 KMC012256A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180003.1| bHLH protein; protein id: At2g24260.1, supporte... 107 2e-22
gb|AAM10955.1|AF488599_1 putative bHLH transcription factor [Ara... 107 2e-22
ref|NP_200609.1| bHLH protein; protein id: At5g58010.1 [Arabidop... 92 9e-18
ref|NP_194827.1| bHLH protein; protein id: At4g30980.1 [Arabidop... 90 3e-17
gb|AAM10956.1|AF488601_1 putative bHLH transcription factor [Ara... 88 1e-16
>ref|NP_180003.1| bHLH protein; protein id: At2g24260.1, supported by cDNA:
gi_20127071 [Arabidopsis thaliana]
gi|25412204|pir||E84634 hypothetical protein At2g24260
[imported] - Arabidopsis thaliana
gi|4115386|gb|AAD03387.1| unknown protein [Arabidopsis
thaliana]
Length = 350
Score = 107 bits (267), Expect = 2e-22
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = -3
Query: 663 TASSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHARNPLMN 484
TA +SNDS+T+TE QVAKLM+EDMGSAMQYLQGKGLCLMPISLATA+S ATCH+RNPL+
Sbjct: 235 TAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLI- 293
Query: 483 AGHNINNNPSPVIGSNGDNGPSSPGMS 403
P V G + P+ GM+
Sbjct: 294 --------PGAVADVGGPSPPNLSGMT 312
>gb|AAM10955.1|AF488599_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 350
Score = 107 bits (267), Expect = 2e-22
Identities = 55/87 (63%), Positives = 65/87 (74%)
Frame = -3
Query: 663 TASSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHARNPLMN 484
TA +SNDS+T+TE QVAKLM+EDMGSAMQYLQGKGLCLMPISLATA+S ATCH+RNPL+
Sbjct: 235 TAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLI- 293
Query: 483 AGHNINNNPSPVIGSNGDNGPSSPGMS 403
P V G + P+ GM+
Sbjct: 294 --------PGAVADVGGPSPPNLSGMT 312
>ref|NP_200609.1| bHLH protein; protein id: At5g58010.1 [Arabidopsis thaliana]
gi|8885595|dbj|BAA97525.1| contains similarity to
unknown protein~gb|AAD03387.1~gene_id:F2C19.2
[Arabidopsis thaliana]
Length = 297
Score = 91.7 bits (226), Expect = 9e-18
Identities = 45/65 (69%), Positives = 52/65 (79%)
Frame = -3
Query: 678 NSQKMTASSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHAR 499
N SSN+SL TEQ+VAKLM+EDMGSAMQYLQGKGLCLMPISLATA+S++T H+R
Sbjct: 198 NGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSR 257
Query: 498 NPLMN 484
L N
Sbjct: 258 GSLFN 262
>ref|NP_194827.1| bHLH protein; protein id: At4g30980.1 [Arabidopsis thaliana]
gi|25407699|pir||G85362 hypothetical protein AT4g30980
[imported] - Arabidopsis thaliana
gi|2980768|emb|CAA18195.1| putative protein [Arabidopsis
thaliana] gi|7270000|emb|CAB79816.1| putative protein
[Arabidopsis thaliana]
Length = 367
Score = 90.1 bits (222), Expect = 3e-17
Identities = 49/81 (60%), Positives = 61/81 (74%), Gaps = 1/81 (1%)
Frame = -3
Query: 657 SSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHARNPLM-NA 481
+SS+ +TE QVAKLM+EDMGSAMQYLQGKGLCLMPISLAT +S ATC +R+P + +
Sbjct: 275 TSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDT 334
Query: 480 GHNINNNPSPVIGSNGDNGPS 418
G ++ N S I +NG NG S
Sbjct: 335 GVPLSPNLSTTIVANG-NGSS 354
>gb|AAM10956.1|AF488601_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 88.2 bits (217), Expect = 1e-16
Identities = 48/81 (59%), Positives = 60/81 (73%), Gaps = 1/81 (1%)
Frame = -3
Query: 657 SSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHARNPLM-NA 481
+SS+ +TE Q AKLM+EDMGSAMQYLQGKGLCLMPISLAT +S ATC +R+P + +
Sbjct: 218 TSSSGEAKMTEHQXAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDT 277
Query: 480 GHNINNNPSPVIGSNGDNGPS 418
G ++ N S I +NG NG S
Sbjct: 278 GVPLSPNLSTTIVANG-NGSS 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,838,982
Number of Sequences: 1393205
Number of extensions: 15727450
Number of successful extensions: 81710
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 65684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79469
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
