Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012250A_C01 KMC012250A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA76834.1| receptor protein tyrosine phosphatase 40 0.028
ref|NP_525076.2| Protein tyrosine phosphatase 4E CG6899-PA gi|72... 40 0.028
pir||A49502 protein-tyrosine-phosphatase (EC 3.1.3.48), receptor... 40 0.028
ref|NP_595802.1| serine rich protein [Schizosaccharomyces pombe]... 32 0.054
dbj|BAA13766.1| unnamed protein product [Schizosaccharomyces pombe] 32 0.054
>gb|AAA76834.1| receptor protein tyrosine phosphatase
Length = 1767
Score = 40.0 bits (92), Expect = 0.028
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 421 EEEEEDDDDDDDDRDAMNTSSRS*LGSL*CSA 326
EE+EEDDDDDDDD+ +N + + L S CS+
Sbjct: 1671 EEDEEDDDDDDDDQQPLNNETTATLSSASCSS 1702
>ref|NP_525076.2| Protein tyrosine phosphatase 4E CG6899-PA gi|7290546|gb|AAF45998.1|
CG6899-PA [Drosophila melanogaster]
Length = 1767
Score = 40.0 bits (92), Expect = 0.028
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 421 EEEEEDDDDDDDDRDAMNTSSRS*LGSL*CSA 326
EE+EEDDDDDDDD+ +N + + L S CS+
Sbjct: 1671 EEDEEDDDDDDDDQQPLNNETTATLSSASCSS 1702
>pir||A49502 protein-tyrosine-phosphatase (EC 3.1.3.48), receptor type 4E, splice
form A precursor - fruit fly (Drosophila melanogaster)
Length = 1767
Score = 40.0 bits (92), Expect = 0.028
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 421 EEEEEDDDDDDDDRDAMNTSSRS*LGSL*CSA 326
EE+EEDDDDDDDD+ +N + + L S CS+
Sbjct: 1671 EEDEEDDDDDDDDQQPLNNETTATLSSASCSS 1702
>ref|NP_595802.1| serine rich protein [Schizosaccharomyces pombe]
gi|7491494|pir||T39869 probable lysophospholipase (EC
3.1.1.5) SPBC1E8.05 [similarity] - fission yeast
(Schizosaccharomyces pombe) gi|2842525|emb|CAA16838.1|
serine rich protein [Schizosaccharomyces pombe]
Length = 317
Score = 31.6 bits (70), Expect(2) = 0.054
Identities = 26/77 (33%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 431 NASSLKSKAASIGLNSSFSKSSCPKSSKPEAMASEKAAI*KKLYSSSS---SEWYRPILG 601
++SS S + S +SS SKSS SS ++ AS ++ +SSSS S
Sbjct: 178 SSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 237
Query: 602 DKAIISQASISSTNSES 652
AI+S A +ST+ S
Sbjct: 238 SGAIVSNAKTASTDDSS 254
Score = 26.6 bits (57), Expect(2) = 0.054
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = +3
Query: 369 FIASRSSSSSSSSSSSSS 422
FI S SS+ SSSSSSSSS
Sbjct: 146 FITSSSSTPSSSSSSSSS 163
>dbj|BAA13766.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 316
Score = 31.6 bits (70), Expect(2) = 0.054
Identities = 26/77 (33%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 431 NASSLKSKAASIGLNSSFSKSSCPKSSKPEAMASEKAAI*KKLYSSSS---SEWYRPILG 601
++SS S + S +SS SKSS SS ++ AS ++ +SSSS S
Sbjct: 173 SSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 232
Query: 602 DKAIISQASISSTNSES 652
AI+S A +ST+ S
Sbjct: 233 SGAIVSNAKTASTDDSS 249
Score = 26.6 bits (57), Expect(2) = 0.054
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = +3
Query: 369 FIASRSSSSSSSSSSSSS 422
FI S SS+ SSSSSSSSS
Sbjct: 141 FITSSSSTPSSSSSSSSS 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,199,079
Number of Sequences: 1393205
Number of extensions: 12614089
Number of successful extensions: 148806
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 54048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109597
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
