Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012200A_C01 KMC012200A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22735.1| putative laccase (diphenol oxidase) family protei... 163 1e-39
ref|NP_199621.1| laccase (diphenol oxidase) family; protein id: ... 163 1e-39
dbj|BAB61150.1| putative diphenol oxidase [Oryza sativa (japonic... 160 1e-38
ref|NP_196498.1| laccase (diphenol oxidase) family; protein id: ... 158 5e-38
gb|AAB09228.1| diphenol oxidase 152 3e-36
>gb|AAO22735.1| putative laccase (diphenol oxidase) family protein [Arabidopsis
thaliana] gi|28827682|gb|AAO50685.1| putative laccase
(diphenol oxidase) family protein [Arabidopsis thaliana]
Length = 565
Score = 163 bits (413), Expect = 1e-39
Identities = 70/104 (67%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Frame = -2
Query: 557 LDHPMHLHGFSFHVVGYGFGNFN--KRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADN 384
LDHPMHLHGFSF+VVG GFGN+N + Y+L DPP NT+ VP+NGW AIRFVADN
Sbjct: 460 LDHPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADN 519
Query: 383 PGVWFMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC 252
PGVWFMHCHL+RH +WGM VFIVKNG+ + ++LPPP D+PPC
Sbjct: 520 PGVWFMHCHLDRHQTWGMNVVFIVKNGREPNQQILPPPDDLPPC 563
>ref|NP_199621.1| laccase (diphenol oxidase) family; protein id: At5g48100.1
[Arabidopsis thaliana] gi|10177761|dbj|BAB11074.1|
laccase (diphenol oxidase) [Arabidopsis thaliana]
Length = 490
Score = 163 bits (413), Expect = 1e-39
Identities = 70/104 (67%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Frame = -2
Query: 557 LDHPMHLHGFSFHVVGYGFGNFN--KRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADN 384
LDHPMHLHGFSF+VVG GFGN+N + Y+L DPP NT+ VP+NGW AIRFVADN
Sbjct: 385 LDHPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADN 444
Query: 383 PGVWFMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC 252
PGVWFMHCHL+RH +WGM VFIVKNG+ + ++LPPP D+PPC
Sbjct: 445 PGVWFMHCHLDRHQTWGMNVVFIVKNGREPNQQILPPPDDLPPC 488
>dbj|BAB61150.1| putative diphenol oxidase [Oryza sativa (japonica cultivar-group)]
Length = 599
Score = 160 bits (404), Expect = 1e-38
Identities = 67/101 (66%), Positives = 84/101 (82%)
Frame = -2
Query: 554 DHPMHLHGFSFHVVGYGFGNFNKRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADNPGV 375
+HPMHLHGF+F+VVG G G F++R+ P Y+LIDPP NTV VPK+ WAAIRF ADNPGV
Sbjct: 499 NHPMHLHGFTFYVVGRGSGTFDERRDPATYNLIDPPFQNTVSVPKSSWAAIRFRADNPGV 558
Query: 374 WFMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC 252
WFMHCH +RH+ WGM+T+FIVK+GK+ A++LP PP+MP C
Sbjct: 559 WFMHCHFDRHVVWGMDTMFIVKDGKTPQAQMLPRPPNMPEC 599
>ref|NP_196498.1| laccase (diphenol oxidase) family; protein id: At5g09360.1
[Arabidopsis thaliana] gi|9955523|emb|CAC05462.1|
laccase-like protein [Arabidopsis thaliana]
Length = 569
Score = 158 bits (399), Expect = 5e-38
Identities = 62/100 (62%), Positives = 84/100 (84%)
Frame = -2
Query: 551 HPMHLHGFSFHVVGYGFGNFNKRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADNPGVW 372
HP+HLHG++F+VVG GFGNF++RK P+ Y+L+DPP TV VP+NGW A+RFVA+NPGVW
Sbjct: 470 HPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVW 529
Query: 371 FMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC 252
+HCH+ERH +WGM TVFIVK+G + ++++ PPPD+P C
Sbjct: 530 LLHCHIERHATWGMNTVFIVKDGPTKSSRMVKPPPDLPSC 569
>gb|AAB09228.1| diphenol oxidase
Length = 565
Score = 152 bits (384), Expect = 3e-36
Identities = 64/101 (63%), Positives = 77/101 (75%)
Frame = -2
Query: 554 DHPMHLHGFSFHVVGYGFGNFNKRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADNPGV 375
+HPMHLHGFSF++VG G GNFN + P Y+LIDPP +NT+ +PK GWAAIRFVADNPGV
Sbjct: 462 NHPMHLHGFSFYLVGTGLGNFNNQTDPDNYNLIDPPEVNTIQLPKKGWAAIRFVADNPGV 521
Query: 374 WFMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC 252
WF+HCH ERH +WGM IVKNG ++ + P P MPPC
Sbjct: 522 WFLHCHFERHTTWGMAVAIIVKNGGTTSTSMRPRPAYMPPC 562
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,241,390
Number of Sequences: 1393205
Number of extensions: 12245357
Number of successful extensions: 39329
Number of sequences better than 10.0: 406
Number of HSP's better than 10.0 without gapping: 37106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38961
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
