Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012191A_C01 KMC012191A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51180 actin [imported] - Picea rubens gi|6103623|gb|AAF036... 347 3e-95
pir||T51183 actin isoform B [imported] - Mimosa pudica gi|668350... 347 3e-95
sp|P53504|ACT1_SORBI ACTIN 1 gi|7441414|pir||JE0147 actin 1 - so... 347 3e-95
gb|AAO38821.1| actin [Oryza sativa (japonica cultivar-group)] 347 3e-95
pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|g... 348 3e-95
>pir||T51180 actin [imported] - Picea rubens gi|6103623|gb|AAF03692.1|AF172094_1
actin [Picea rubens]
Length = 377
Score = 347 bits (889), Expect(2) = 3e-95
Identities = 169/171 (98%), Positives = 169/171 (98%)
Frame = +1
Query: 82 VGDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 261
V DNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 70
Query: 262 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 441
YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130
Query: 442 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 594
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
Sbjct: 131 VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
Score = 24.3 bits (51), Expect(2) = 3e-95
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = +2
Query: 53 MADAEDIQPLL 85
MADAEDIQPL+
Sbjct: 1 MADAEDIQPLV 11
>pir||T51183 actin isoform B [imported] - Mimosa pudica
gi|6683504|dbj|BAA89214.1| actin isoform B [Mimosa
pudica]
Length = 377
Score = 347 bits (889), Expect(2) = 3e-95
Identities = 169/171 (98%), Positives = 169/171 (98%)
Frame = +1
Query: 82 VGDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 261
V DNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 70
Query: 262 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 441
YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130
Query: 442 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 594
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
Sbjct: 131 VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
Score = 24.3 bits (51), Expect(2) = 3e-95
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = +2
Query: 53 MADAEDIQPLL 85
MADAEDIQPL+
Sbjct: 1 MADAEDIQPLV 11
>sp|P53504|ACT1_SORBI ACTIN 1 gi|7441414|pir||JE0147 actin 1 - sorghum
gi|499012|emb|CAA55923.1| actin [Sorghum bicolor]
Length = 377
Score = 347 bits (889), Expect(2) = 3e-95
Identities = 169/171 (98%), Positives = 169/171 (98%)
Frame = +1
Query: 82 VGDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 261
V DNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 70
Query: 262 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 441
YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130
Query: 442 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 594
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
Sbjct: 131 TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
Score = 24.3 bits (51), Expect(2) = 3e-95
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = +2
Query: 53 MADAEDIQPLL 85
MADAEDIQPL+
Sbjct: 1 MADAEDIQPLV 11
>gb|AAO38821.1| actin [Oryza sativa (japonica cultivar-group)]
Length = 377
Score = 347 bits (889), Expect(2) = 3e-95
Identities = 169/171 (98%), Positives = 169/171 (98%)
Frame = +1
Query: 82 VGDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 261
V DNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 70
Query: 262 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 441
YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130
Query: 442 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 594
PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
Sbjct: 131 TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
Score = 24.3 bits (51), Expect(2) = 3e-95
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = +2
Query: 53 MADAEDIQPLL 85
MADAEDIQPL+
Sbjct: 1 MADAEDIQPLV 11
>pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|gb|AAC49652.1|
actin [Striga asiatica]
Length = 377
Score = 348 bits (892), Expect(2) = 3e-95
Identities = 169/171 (98%), Positives = 170/171 (98%)
Frame = +1
Query: 82 VGDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 261
V DNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK 70
Query: 262 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 441
YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETFN
Sbjct: 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 130
Query: 442 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 594
APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
Sbjct: 131 APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
Score = 22.7 bits (47), Expect(2) = 3e-95
Identities = 9/11 (81%), Positives = 11/11 (99%)
Frame = +2
Query: 53 MADAEDIQPLL 85
MA+AEDIQPL+
Sbjct: 1 MAEAEDIQPLV 11
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,083,414
Number of Sequences: 1393205
Number of extensions: 14040120
Number of successful extensions: 54352
Number of sequences better than 10.0: 1406
Number of HSP's better than 10.0 without gapping: 51612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53977
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
