Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012160A_C01 KMC012160A_c01
(886 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89594.1| P0446G04.18 [Oryza sativa (japonica cultivar-gro... 167 3e-46
gb|AAL91253.1| At3g51780/ORF3 [Arabidopsis thaliana] gi|23505833... 149 5e-35
ref|NP_190746.1| putative protein; protein id: At3g51780.1, supp... 149 5e-35
gb|AAM63329.1| unknown [Arabidopsis thaliana] 149 5e-35
ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arab... 135 8e-31
>dbj|BAB89594.1| P0446G04.18 [Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 167 bits (424), Expect(2) = 3e-46
Identities = 93/157 (59%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Frame = -3
Query: 785 TGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGA--SKERKLEELRKHNKMLK 612
TG++PE QRLFFRG+EK + E GVKD ++LLLLE A + E++ E + M+K
Sbjct: 89 TGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKPAPANVEQRAEPVIMDESMMK 148
Query: 611 ATEAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEA 432
A EA+ VRAEVD LS +V LE +V G K+ DK+FVV TELLM +LL LDGIEAEGEA
Sbjct: 149 ACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVLTELLMMELLKLDGIEAEGEA 208
Query: 431 KLQRKAEVRRVQNLVDTLDSLKARNSNPFSNIG*AVS 321
+ QRKAEVRRVQ LV+TLD LKARN+NPFS+ +VS
Sbjct: 209 RAQRKAEVRRVQGLVETLDKLKARNANPFSDQNKSVS 245
Score = 40.4 bits (93), Expect(2) = 3e-46
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -1
Query: 319 VTTPWETFDSGMGSLNAPTSNSSS 248
VTT WETFD+GMGSLNAP SS
Sbjct: 246 VTTQWETFDNGMGSLNAPPPRVSS 269
>gb|AAL91253.1| At3g51780/ORF3 [Arabidopsis thaliana] gi|23505833|gb|AAN28776.1|
At3g51780/ORF3 [Arabidopsis thaliana]
Length = 269
Score = 149 bits (376), Expect = 5e-35
Identities = 89/191 (46%), Positives = 120/191 (62%)
Frame = -3
Query: 788 KTGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGASKERKLEELRKHNKMLKA 609
KTGL+ E ++ FRG E+++ E GVKD S+L+++ + +K + + +M KA
Sbjct: 79 KTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQPPVVTKEMEKA 138
Query: 608 TEAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEAK 429
A+ V EVD LS+RV ALEVAV+GGT+V+ +EF ++ ELLMRQLL LDGIEAEG+AK
Sbjct: 139 IAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAK 198
Query: 428 LQRKAEVRRVQNLVDTLDSLKARNSNPFSNIG*AVSSYNPMGDL*FWNGKFECPHLKFIF 249
+QRKAEVRR+QNL + +D LKAR SNPF + A + G P
Sbjct: 199 VQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVSTEWESFGNGVGSLNPPPPASPS 258
Query: 248 *NVTQD*ERCD 216
NVTQD E+ D
Sbjct: 259 ANVTQDWEKFD 269
>ref|NP_190746.1| putative protein; protein id: At3g51780.1, supported by cDNA:
21630., supported by cDNA: gi_19699282 [Arabidopsis
thaliana] gi|11292138|pir||T51149 hypothetical protein
[imported] - Arabidopsis thaliana
gi|3068705|gb|AAC14405.1| unknown [Arabidopsis thaliana]
Length = 269
Score = 149 bits (376), Expect = 5e-35
Identities = 89/191 (46%), Positives = 120/191 (62%)
Frame = -3
Query: 788 KTGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGASKERKLEELRKHNKMLKA 609
KTGL+ E ++ FRG E+++ E GVKD S+L+++ + +K + + +M KA
Sbjct: 79 KTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQPPVVTKEMEKA 138
Query: 608 TEAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEAK 429
A+ V EVD LS+RV ALEVAV+GGT+V+ +EF ++ ELLMRQLL LDGIEAEG+AK
Sbjct: 139 IAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAK 198
Query: 428 LQRKAEVRRVQNLVDTLDSLKARNSNPFSNIG*AVSSYNPMGDL*FWNGKFECPHLKFIF 249
+QRKAEVRR+QNL + +D LKAR SNPF + A + G P
Sbjct: 199 VQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVSTEWESFGNGVGSLNPPPPASPS 258
Query: 248 *NVTQD*ERCD 216
NVTQD E+ D
Sbjct: 259 ANVTQDWEKFD 269
>gb|AAM63329.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 149 bits (376), Expect = 5e-35
Identities = 89/191 (46%), Positives = 120/191 (62%)
Frame = -3
Query: 788 KTGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGASKERKLEELRKHNKMLKA 609
KTGL+ E ++ FRG E+++ E GVKD S+L+++ + +K + + +M KA
Sbjct: 78 KTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQPPVVTKEMEKA 137
Query: 608 TEAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEAK 429
A+ V EVD LS+RV ALEVAV+GGT+V+ +EF ++ ELLMRQLL LDGIEAEG+AK
Sbjct: 138 IAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAK 197
Query: 428 LQRKAEVRRVQNLVDTLDSLKARNSNPFSNIG*AVSSYNPMGDL*FWNGKFECPHLKFIF 249
+QRKAEVRR+QNL + +D LKAR SNPF + A + G P
Sbjct: 198 VQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVSTEWESFGNGVGSLNPPPPASPS 257
Query: 248 *NVTQD*ERCD 216
NVTQD E+ D
Sbjct: 258 ANVTQDWEKFD 268
>ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arabidopsis thaliana]
gi|10177741|dbj|BAB11054.1| contains similarity to
unknown protein~emb|CAB87278.1~gene_id:MSG15.15
[Arabidopsis thaliana]
Length = 326
Score = 135 bits (340), Expect = 8e-31
Identities = 67/144 (46%), Positives = 103/144 (71%)
Frame = -3
Query: 785 TGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGASKERKLEELRKHNKMLKAT 606
TG+ ++Q+L ++ +E++++ V GVKDKS+++L+ED S+E++ E+RK K KA+
Sbjct: 83 TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKAS 142
Query: 605 EAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEAKL 426
+AI+ + EVD L RVSA E+ G K+++K+ V ELLM +L+ LD I AEG+ KL
Sbjct: 143 KAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKL 202
Query: 425 QRKAEVRRVQNLVDTLDSLKARNS 354
QRK +V+RVQN V+TLD+LK +NS
Sbjct: 203 QRKMQVKRVQNYVETLDALKVKNS 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 737,483,850
Number of Sequences: 1393205
Number of extensions: 15669957
Number of successful extensions: 50662
Number of sequences better than 10.0: 303
Number of HSP's better than 10.0 without gapping: 44562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49332
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
