Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012086A_C01 KMC012086A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201083.1| putative protein; protein id: At5g62770.1 [Arab... 64 2e-09
ref|NP_566827.1| expressed protein; protein id: At3g27880.1, sup... 49 8e-05
dbj|BAB91735.1| P0671D01.12 [Oryza sativa (japonica cultivar-gro... 46 5e-04
ref|NP_564988.1| expressed protein; protein id: At1g70420.1, sup... 39 0.061
gb|AAM65077.1| unknown [Arabidopsis thaliana] 37 0.18
>ref|NP_201083.1| putative protein; protein id: At5g62770.1 [Arabidopsis thaliana]
gi|10177455|dbj|BAB10846.1|
gene_id:MQB2.9~pir||T01480~similar to unknown protein
[Arabidopsis thaliana]
Length = 268
Score = 63.9 bits (154), Expect = 2e-09
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Frame = -2
Query: 653 KRWKLRNLLLSRSHSNGKDDSKLPAA---NGGSGEDD----------GGGKKGKDGEQSK 513
KRWKLRNLL RS S G D PA N + D G ++G++ E++K
Sbjct: 181 KRWKLRNLLYVRSSSEGNDKLVFPAPVKKNDETVSDQREEEEPPSKVDGEEEGREREETK 240
Query: 512 RKSFLPNRPEFVGLFANVNGLGRNLNPF 429
R++++P R + +G+ NVNGL R+L PF
Sbjct: 241 RQTYVPYRKDMIGILKNVNGLSRHLRPF 268
>ref|NP_566827.1| expressed protein; protein id: At3g27880.1, supported by cDNA:
15282. [Arabidopsis thaliana]
gi|11994493|dbj|BAB02534.1| gene_id:K16N12.10~unknown
protein [Arabidopsis thaliana]
gi|21553599|gb|AAM62692.1| unknown [Arabidopsis
thaliana]
Length = 242
Score = 48.5 bits (114), Expect = 8e-05
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 19/94 (20%)
Frame = -2
Query: 653 KRWKLRNLLLSRSHSNGKDDSKLPAANGGSGEDDGGGKKGKDG----------------- 525
KRW+LR+ L RS S+GK K +D+ K K
Sbjct: 150 KRWRLRDFL-KRSKSDGKQSLKFLNPTNRDDDDESSKSKKKVSVSVTVSAHEKFYLRNKA 208
Query: 524 --EQSKRKSFLPNRPEFVGLFANVNGLGRNLNPF 429
E+ KRKS+LP + + VGLF+N++ G+ PF
Sbjct: 209 IKEEDKRKSYLPYKQDLVGLFSNIHRYGKTFPPF 242
>dbj|BAB91735.1| P0671D01.12 [Oryza sativa (japonica cultivar-group)]
gi|21952910|dbj|BAC06322.1| P0445H04.35 [Oryza sativa
(japonica cultivar-group)]
Length = 287
Score = 45.8 bits (107), Expect = 5e-04
Identities = 33/101 (32%), Positives = 45/101 (43%), Gaps = 27/101 (26%)
Frame = -2
Query: 650 RWK-LRNLLLSRSHSNGKDDSKLPAANGGSG----------EDDGGGKKGKD-------- 528
RW+ + L+ RSHS+GK+ A GG + +GGG GK
Sbjct: 164 RWRRISERLVRRSHSDGKEKFVFLNAPGGGAPSPHPPKDNDDANGGGSVGKGDAGRHGWS 223
Query: 527 --------GEQSKRKSFLPNRPEFVGLFANVNGLGRNLNPF 429
G +R+S+LP + E VGLFAN GL + PF
Sbjct: 224 YYSKGGGGGSGGRRRSYLPYKQELVGLFANCGGLTPSRAPF 264
>ref|NP_564988.1| expressed protein; protein id: At1g70420.1, supported by cDNA:
gi_15010575 [Arabidopsis thaliana]
gi|7485683|pir||T01480 hypothetical protein F17O7.4 -
Arabidopsis thaliana gi|3176675|gb|AAC18798.1| F17O7.4
[Arabidopsis thaliana] gi|15010576|gb|AAK73947.1|
At1g70420/F17O7_4 [Arabidopsis thaliana]
gi|21700801|gb|AAM70524.1| At1g70420/F17O7_4
[Arabidopsis thaliana]
Length = 272
Score = 38.9 bits (89), Expect = 0.061
Identities = 34/114 (29%), Positives = 51/114 (43%), Gaps = 39/114 (34%)
Frame = -2
Query: 653 KRWKLRNLLLSRSHSNGKDDSKLPAANGGSGEDDGGG------------KKGKDG----- 525
K W+ R+L+L RS+S+GKD + + +NG S +KGK+
Sbjct: 163 KLWRFRDLVL-RSNSDGKD-AFVFLSNGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDK 220
Query: 524 ----------------------EQSKRKSFLPNRPEFVGLFANVNGLGRNLNPF 429
E+ KR+S+LP + VG F NVNGL RN++P+
Sbjct: 221 KKDKMRTKSAHEKLYMRNRAMREEGKRRSYLPYK--HVGFFTNVNGLTRNVHPY 272
>gb|AAM65077.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 37.4 bits (85), Expect = 0.18
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -2
Query: 524 EQSKRKSFLPNRPEFVGLFANVNGLGRNLNPF 429
E+ K +S+LP + VG F NVNGL RN++PF
Sbjct: 268 EEVKHRSYLPYKQ--VGFFTNVNGLSRNIHPF 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,258,436
Number of Sequences: 1393205
Number of extensions: 12635347
Number of successful extensions: 58184
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 47760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57117
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
