Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012070A_C01 KMC012070A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195222.1| cyclophilin - like protein; protein id: At4g349... 185 2e-46
pir||T50837 peptidylprolyl isomerase (EC 5.2.1.8) CYP5 [similari... 135 2e-31
ref|NP_180557.1| cyclophilin; protein id: At2g29960.1, supported... 135 2e-31
gb|AAM63088.1| cyclophilin [Arabidopsis thaliana] 135 3e-31
ref|NP_200679.1| cyclophilin ROC7; protein id: At5g58710.1, supp... 129 3e-29
>ref|NP_195222.1| cyclophilin - like protein; protein id: At4g34960.1 [Arabidopsis
thaliana] gi|7437319|pir||T05766 peptidylprolyl
isomerase (EC 5.2.1.8) M4E13.20 - Arabidopsis thaliana
gi|2924507|emb|CAA17761.1| cyclophilin-like protein
[Arabidopsis thaliana] gi|7270447|emb|CAB80213.1|
cyclophilin-like protein [Arabidopsis thaliana]
gi|26450419|dbj|BAC42324.1| putative cyclophilin like
protein ROC14 [Arabidopsis thaliana]
gi|28827322|gb|AAO50505.1| putative cyclophilin
[Arabidopsis thaliana]
Length = 224
Score = 185 bits (470), Expect = 2e-46
Identities = 86/100 (86%), Positives = 97/100 (97%)
Frame = -3
Query: 517 VHHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSHGSQFFITTVKASWLDGEHV 338
+H DGK+S+SIYGGTFPDENF+I+HSHAG+V+MAN+GPDS+GSQFFITTVKASWL+GEHV
Sbjct: 118 IHGDGKSSDSIYGGTFPDENFKIQHSHAGMVAMANTGPDSNGSQFFITTVKASWLEGEHV 177
Query: 337 VFGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIPK 218
V GKV+QGMD VFAIEGGAGTYSGKPRKKVVIADSGEIPK
Sbjct: 178 VLGKVIQGMDNVFAIEGGAGTYSGKPRKKVVIADSGEIPK 217
>pir||T50837 peptidylprolyl isomerase (EC 5.2.1.8) CYP5 [similarity] -
Arabidopsis thaliana gi|2443755|gb|AAB71401.1|
cyclophilin [Arabidopsis thaliana]
Length = 201
Score = 135 bits (341), Expect = 2e-31
Identities = 66/98 (67%), Positives = 77/98 (78%)
Frame = -3
Query: 514 HHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSHGSQFFITTVKASWLDGEHVV 335
H +G ESIYG F DENF++KH+ GV+SMANSG D++GSQFFITTV SWLDG HVV
Sbjct: 104 HGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVV 163
Query: 334 FGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIP 221
FGKVVQGMD+V+ IE G SG P+ KVVIADSGE+P
Sbjct: 164 FGKVVQGMDVVYKIE-AEGKQSGTPKSKVVIADSGELP 200
>ref|NP_180557.1| cyclophilin; protein id: At2g29960.1, supported by cDNA: 19211.,
supported by cDNA: gi_15451025 [Arabidopsis thaliana]
gi|7437323|pir||T02489 peptidylprolyl isomerase (EC
5.2.1.8) F23F1.12 - Arabidopsis thaliana
gi|3420055|gb|AAC31856.1| cyclophilin [Arabidopsis
thaliana] gi|15451026|gb|AAK96784.1| cyclophilin
[Arabidopsis thaliana] gi|23197720|gb|AAN15387.1|
cyclophilin [Arabidopsis thaliana]
Length = 201
Score = 135 bits (341), Expect = 2e-31
Identities = 66/98 (67%), Positives = 77/98 (78%)
Frame = -3
Query: 514 HHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSHGSQFFITTVKASWLDGEHVV 335
H +G ESIYG F DENF++KH+ GV+SMANSG D++GSQFFITTV SWLDG HVV
Sbjct: 104 HGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVV 163
Query: 334 FGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIP 221
FGKVVQGMD+V+ IE G SG P+ KVVIADSGE+P
Sbjct: 164 FGKVVQGMDVVYKIE-AEGKQSGTPKSKVVIADSGELP 200
>gb|AAM63088.1| cyclophilin [Arabidopsis thaliana]
Length = 201
Score = 135 bits (340), Expect = 3e-31
Identities = 66/98 (67%), Positives = 76/98 (77%)
Frame = -3
Query: 514 HHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSHGSQFFITTVKASWLDGEHVV 335
H +G ESIYG F DENF++KH+ GV+SMANSG D +GSQFFITTV SWLDG HVV
Sbjct: 104 HGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDXNGSQFFITTVTTSWLDGRHVV 163
Query: 334 FGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIP 221
FGKVVQGMD+V+ IE G SG P+ KVVIADSGE+P
Sbjct: 164 FGKVVQGMDVVYKIE-AEGKQSGTPKSKVVIADSGELP 200
>ref|NP_200679.1| cyclophilin ROC7; protein id: At5g58710.1, supported by cDNA:
25325., supported by cDNA: gi_15081669, supported by
cDNA: gi_20334833, supported by cDNA: gi_6180042
[Arabidopsis thaliana] gi|11270328|pir||T50838
peptidylprolyl isomerase (EC 5.2.1.8) ROC7 [similarity]
- Arabidopsis thaliana
gi|6180043|gb|AAF05760.1|AF192490_1 cyclophilin
[Arabidopsis thaliana] gi|8843791|dbj|BAA97339.1|
cyclophilin [Arabidopsis thaliana]
gi|15081670|gb|AAK82490.1| AT5g58710/mzn1_160
[Arabidopsis thaliana] gi|20334834|gb|AAM16173.1|
AT5g58710/mzn1_160 [Arabidopsis thaliana]
gi|21554366|gb|AAM63473.1| cyclophilin ROC7 [Arabidopsis
thaliana]
Length = 204
Score = 129 bits (323), Expect = 3e-29
Identities = 61/98 (62%), Positives = 74/98 (75%)
Frame = -3
Query: 514 HHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSHGSQFFITTVKASWLDGEHVV 335
H +G ESIYG F DENF++KH+ G +SMAN+G D++GSQFFITTV SWLDG HVV
Sbjct: 107 HGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVV 166
Query: 334 FGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIP 221
FGKVV GMD+V+ +E G SG P+ KVVI DSGE+P
Sbjct: 167 FGKVVTGMDVVYKVE-AEGNQSGTPKSKVVIVDSGELP 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,035,438
Number of Sequences: 1393205
Number of extensions: 11576230
Number of successful extensions: 26256
Number of sequences better than 10.0: 791
Number of HSP's better than 10.0 without gapping: 25226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26032
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
