Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012063A_C01 KMC012063A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02717.1| aldose 1-epimerase-like protein [Arabidopsis tha... 260 1e-71
ref|NP_566594.1| aldose 1-epimerase, putative; protein id: At3g1... 260 7e-69
gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like pro... 235 3e-61
ref|NP_197018.1| putative aldose 1-epimerase - like protein; pro... 164 1e-39
ref|ZP_00087567.1| hypothetical protein [Pseudomonas fluorescens... 163 2e-39
>dbj|BAB02717.1| aldose 1-epimerase-like protein [Arabidopsis thaliana]
Length = 341
Score = 260 bits (665), Expect(2) = 1e-71
Identities = 126/162 (77%), Positives = 140/162 (85%), Gaps = 1/162 (0%)
Frame = +1
Query: 88 TITSLSVPAKDGVLSDVVLGLDSVESYQKGLSPYFGCIVGRVANRIKDGKFTLDGVEYSL 267
TITSLSVP K+G L DVVLG DSV+ Y KGL+PYFGCIVGRVANRIK+GKF+L+GV Y+L
Sbjct: 29 TITSLSVPDKNGKLGDVVLGFDSVDPYVKGLAPYFGCIVGRVANRIKEGKFSLNGVNYTL 88
Query: 268 PINNPPNSLHGGNVGFDKKIWEVIEY-REGETPSITFKYQSHDGEEGYPGEITVTATYTL 444
PIN PPNSLHGGN GFDKKIWEV + R+GE P ITFKY S DGEEGYPG ++VTATYTL
Sbjct: 89 PINKPPNSLHGGNKGFDKKIWEVAGHKRDGEKPFITFKYHSADGEEGYPGAVSVTATYTL 148
Query: 445 TSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSGNILDH 570
TS TT+RLDME VP++K T INLAQHTYWNLAGH SGNILDH
Sbjct: 149 TSATTMRLDMEAVPENKDTPINLAQHTYWNLAGHDSGNILDH 190
Score = 31.6 bits (70), Expect(2) = 1e-71
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 9 DGQNQKAELFELNNGAMQVLITNLG 83
D E+FELNNG MQV I+N G
Sbjct: 3 DQSKNTPEIFELNNGTMQVKISNYG 27
>ref|NP_566594.1| aldose 1-epimerase, putative; protein id: At3g17940.1, supported by
cDNA: gi_14532615 [Arabidopsis thaliana]
gi|14532616|gb|AAK64036.1| putative aldose 1-epimerase
[Arabidopsis thaliana] gi|25054834|gb|AAN71907.1|
putative aldose 1-epimerase [Arabidopsis thaliana]
Length = 323
Score = 260 bits (665), Expect = 7e-69
Identities = 126/162 (77%), Positives = 140/162 (85%), Gaps = 1/162 (0%)
Frame = +1
Query: 88 TITSLSVPAKDGVLSDVVLGLDSVESYQKGLSPYFGCIVGRVANRIKDGKFTLDGVEYSL 267
TITSLSVP K+G L DVVLG DSV+ Y KGL+PYFGCIVGRVANRIK+GKF+L+GV Y+L
Sbjct: 11 TITSLSVPDKNGKLGDVVLGFDSVDPYVKGLAPYFGCIVGRVANRIKEGKFSLNGVNYTL 70
Query: 268 PINNPPNSLHGGNVGFDKKIWEVIEY-REGETPSITFKYQSHDGEEGYPGEITVTATYTL 444
PIN PPNSLHGGN GFDKKIWEV + R+GE P ITFKY S DGEEGYPG ++VTATYTL
Sbjct: 71 PINKPPNSLHGGNKGFDKKIWEVAGHKRDGEKPFITFKYHSADGEEGYPGAVSVTATYTL 130
Query: 445 TSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSGNILDH 570
TS TT+RLDME VP++K T INLAQHTYWNLAGH SGNILDH
Sbjct: 131 TSATTMRLDMEAVPENKDTPINLAQHTYWNLAGHDSGNILDH 172
>gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like protein [Oryza sativa]
gi|21306610|gb|AAM46059.1|AC122145_13 Putative aldose
1-epimerase - like protein [Oryza sativa (japonica
cultivar-group)]
Length = 343
Score = 235 bits (600), Expect = 3e-61
Identities = 118/172 (68%), Positives = 137/172 (79%), Gaps = 10/172 (5%)
Frame = +1
Query: 88 TITSLSVPAKDGVLSDVVLGLDSVESY----------QKGLSPYFGCIVGRVANRIKDGK 237
TITSL VP G L+DVVLG D++E Y QKG+SPYFGCIVGRVANRIK+GK
Sbjct: 24 TITSLIVPDAHGNLADVVLGFDTLEPYMEYVGTGKGGQKGISPYFGCIVGRVANRIKEGK 83
Query: 238 FTLDGVEYSLPINNPPNSLHGGNVGFDKKIWEVIEYREGETPSITFKYQSHDGEEGYPGE 417
FTL+GVEYSL INN PNSLHGG GFDK +W+V+E R+ E PSITF+Y S DGEEGYPG+
Sbjct: 84 FTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVE-RKSECPSITFQYHSKDGEEGYPGD 142
Query: 418 ITVTATYTLTSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSGNILDHS 573
+TV ATY+L +TTLRLDME V ++K T INLAQHTYWNLAGH+SG+ LDHS
Sbjct: 143 VTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSGDTLDHS 194
>ref|NP_197018.1| putative aldose 1-epimerase - like protein; protein id: At5g15140.1
[Arabidopsis thaliana] gi|11358633|pir||T49949 probable
aldose 1-epimerase-like protein - Arabidopsis thaliana
gi|7671483|emb|CAB89324.1| putative aldose
1-epimerase-like protein [Arabidopsis thaliana]
Length = 490
Score = 164 bits (414), Expect = 1e-39
Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Frame = +1
Query: 88 TITSLSVPAKDGVLSDVVLGLDSVESYQKGLSPYFGCIVGRVANRIKDGKFTLDGVEYSL 267
+I SL P K+G + D+VLG DSV++Y+ YFG VGRVANRI GKF L+G EY
Sbjct: 180 SIISLHFPDKNGKMDDIVLGYDSVKTYKTD-KVYFGATVGRVANRIGKGKFKLNGKEYKT 238
Query: 268 PINNPPNSLHGGNVGFDKKIWEVIEYR-EGETPSITFKYQSHDGEEGYPGEITVTATYTL 444
+N+ N+LHGG GF +W V +++ +G+ P I F + S DG++G+PGE++VT TY L
Sbjct: 239 SVNDGKNTLHGGKKGFGDVVWAVAKHQYDGKKPHIVFTHTSPDGDQGFPGELSVTVTYKL 298
Query: 445 TSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSGNIL 564
+ L + ME PKDK T +NLA H+YWNL GH+SG+IL
Sbjct: 299 VKDNELSVVMEAKPKDKATPVNLAHHSYWNLGGHNSGDIL 338
>ref|ZP_00087567.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 382
Score = 163 bits (412), Expect = 2e-39
Identities = 77/159 (48%), Positives = 105/159 (65%)
Frame = +1
Query: 88 TITSLSVPAKDGVLSDVVLGLDSVESYQKGLSPYFGCIVGRVANRIKDGKFTLDGVEYSL 267
T+ +L VP K G L D+VLG D V+ YQKG + YFG +GR NR+ DG F LDG Y +
Sbjct: 64 TLQALQVPDKHGKLDDIVLGFDDVQGYQKGTA-YFGATIGRFGNRLADGAFELDGKRYQV 122
Query: 268 PINNPPNSLHGGNVGFDKKIWEVIEYREGETPSITFKYQSHDGEEGYPGEITVTATYTLT 447
P N+ N+LHGG GFDKK+W+ E ++ ++ +T Y S DGE G+PG +T TY LT
Sbjct: 123 PQNDKTNALHGGTQGFDKKVWKAKETKDKDSVGVTLTYLSADGEMGFPGNLTTEVTYRLT 182
Query: 448 SNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSGNIL 564
+ LR+D + DKPT++NL H+Y+NLAG +G+IL
Sbjct: 183 DSNELRIDYK-ASTDKPTVLNLTNHSYFNLAGAGNGDIL 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,897,790
Number of Sequences: 1393205
Number of extensions: 13304849
Number of successful extensions: 27483
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 26285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27254
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
