Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012020A_C01 KMC012020A_c01
(196 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 54 8e-07
ref|NP_172384.1| 26S protease regulatory subunit 6A; protein id:... 52 2e-06
sp|O04019|PRSA_ARATH 26S protease regulatory subunit 6A homolog ... 52 2e-06
gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidop... 51 5e-06
gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Ar... 51 5e-06
>sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato gi|732815|emb|CAA52445.1| Mg-dependent
ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 53.5 bits (127), Expect = 8e-07
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = +2
Query: 74 KDTNMEDDQLASMSTDDIARASRLLDNEIRILK 172
+D+N EDDQL +MST+DI RASRLLDNEIRI+K
Sbjct: 7 EDSNFEDDQLHAMSTEDIIRASRLLDNEIRIIK 39
>ref|NP_172384.1| 26S protease regulatory subunit 6A; protein id: At1g09100.1,
supported by cDNA: gi_15215787, supported by cDNA:
gi_15724309 [Arabidopsis thaliana]
gi|15215788|gb|AAK91439.1| At1g09100/F7G19_2
[Arabidopsis thaliana]
gi|15724310|gb|AAL06548.1|AF412095_1 At1g09100/F7G19_2
[Arabidopsis thaliana] gi|21700797|gb|AAM70522.1|
At1g09100/F7G19_2 [Arabidopsis thaliana]
Length = 423
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 74 KDTNMEDDQLASMSTDDIARASRLLDNEIRILK 172
+DT+ E DQLASM+TDDI RASRLL NEIRILK
Sbjct: 7 EDTSFEGDQLASMTTDDIGRASRLLANEIRILK 39
>sp|O04019|PRSA_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1) gi|25289949|pir||C86223 hypothetical
protein [imported] - Arabidopsis thaliana
gi|2342675|gb|AAB70397.1| Similar to probable
Mg-dependent ATPase (pir|S56671). ESTs
gb|T46782,gb|AA04798 come from this gene. [Arabidopsis
thaliana]
Length = 419
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 74 KDTNMEDDQLASMSTDDIARASRLLDNEIRILK 172
+DT+ E DQLASM+TDDI RASRLL NEIRILK
Sbjct: 3 EDTSFEGDQLASMTTDDIGRASRLLANEIRILK 35
>gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
Length = 424
Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +2
Query: 80 TNMEDDQLASMSTDDIARASRLLDNEIRILK 172
++ E+DQLASMST+DI RA+RLLDNEIRILK
Sbjct: 10 SSFEEDQLASMSTEDITRATRLLDNEIRILK 40
>gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Arabidopsis
thaliana]
Length = 424
Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +2
Query: 80 TNMEDDQLASMSTDDIARASRLLDNEIRILK 172
++ E+DQLASMST+DI RA+RLLDNEIRILK
Sbjct: 10 SSFEEDQLASMSTEDITRATRLLDNEIRILK 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,151,871
Number of Sequences: 1393205
Number of extensions: 2113717
Number of successful extensions: 5468
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 5386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5468
length of database: 448,689,247
effective HSP length: 40
effective length of database: 392,961,047
effective search space used: 9431065128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
