Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011989A_C01 KMC011989A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181370.1| unknown protein; protein id: At2g38360.1 [Arabi... 97 1e-19
ref|NP_196157.1| putative protein; protein id: At5g05380.1 [Arab... 94 2e-18
gb|AAK96760.1| putative protein [Arabidopsis thaliana] gi|179787... 94 2e-18
ref|NP_191170.1| putative protein; protein id: At3g56110.1, supp... 94 2e-18
emb|CAC80645.1| prenylated Rab receptor 2 [Arabidopsis thaliana] 94 2e-18
>ref|NP_181370.1| unknown protein; protein id: At2g38360.1 [Arabidopsis thaliana]
gi|7487157|pir||T02509 hypothetical protein At2g38360
[imported] - Arabidopsis thaliana
gi|3395436|gb|AAC28768.1| unknown protein [Arabidopsis
thaliana]
Length = 220
Score = 97.4 bits (241), Expect = 1e-19
Identities = 44/63 (69%), Positives = 55/63 (86%)
Frame = -3
Query: 581 VVFLTNVGSLLISTLMVGLAIVCAHGAFRVPEDLFLDEPEPMNTGFLSFLGGAAASAAAP 402
V+FLT+VGS+L+S +M+G+A++CAHGAFR PEDLFLDE EP TGFLSFLGGAA+SAA
Sbjct: 155 VIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEPAATGFLSFLGGAASSAAPA 214
Query: 401 AVA 393
+A
Sbjct: 215 VIA 217
>ref|NP_196157.1| putative protein; protein id: At5g05380.1 [Arabidopsis thaliana]
gi|10176750|dbj|BAB09981.1|
emb|CAB87410.1~gene_id:K18I23.19~similar to unknown
protein [Arabidopsis thaliana]
Length = 217
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -3
Query: 581 VVFLTNVGSLLISTLMVGLAIVCAHGAFRVPEDLFLDEPEPMNTGFLSFLGGAAASAAAP 402
VVFLT+VGSLL S LM+G IVC HGAFRVPEDLFLD+ EP NTG LSFL GAA SAA
Sbjct: 148 VVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLSFLSGAATSAAVA 207
Query: 401 AVA 393
A +
Sbjct: 208 AAS 210
>gb|AAK96760.1| putative protein [Arabidopsis thaliana] gi|17978749|gb|AAL47368.1|
putative protein [Arabidopsis thaliana]
Length = 209
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/65 (70%), Positives = 52/65 (79%)
Frame = -3
Query: 581 VVFLTNVGSLLISTLMVGLAIVCAHGAFRVPEDLFLDEPEPMNTGFLSFLGGAAASAAAP 402
VVF+T+VGSLL S LM+G+AIVC HGAF VP+DLFLDE EP N G LSFLGG+A SAAA
Sbjct: 145 VVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLGGSATSAAAA 204
Query: 401 AVARV 387
RV
Sbjct: 205 VSGRV 209
>ref|NP_191170.1| putative protein; protein id: At3g56110.1, supported by cDNA:
11163., supported by cDNA: gi_15450977, supported by
cDNA: gi_17978748 [Arabidopsis thaliana]
gi|11281603|pir||T47728 hypothetical protein F18O21.70 -
Arabidopsis thaliana gi|7572909|emb|CAB87410.1| putative
protein [Arabidopsis thaliana]
gi|18072821|emb|CAC80650.1| prenylated Rab receptor 6
[Arabidopsis thaliana] gi|21536792|gb|AAM61124.1|
prenylated Rab receptor 2 [Arabidopsis thaliana]
Length = 209
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/65 (70%), Positives = 52/65 (79%)
Frame = -3
Query: 581 VVFLTNVGSLLISTLMVGLAIVCAHGAFRVPEDLFLDEPEPMNTGFLSFLGGAAASAAAP 402
VVF+T+VGSLL S LM+G+AIVC HGAF VP+DLFLDE EP N G LSFLGG+A SAAA
Sbjct: 145 VVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLGGSATSAAAA 204
Query: 401 AVARV 387
RV
Sbjct: 205 VSGRV 209
>emb|CAC80645.1| prenylated Rab receptor 2 [Arabidopsis thaliana]
Length = 216
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -3
Query: 581 VVFLTNVGSLLISTLMVGLAIVCAHGAFRVPEDLFLDEPEPMNTGFLSFLGGAAASAAAP 402
VVFLT+VGSLL S LM+G IVC HGAFRVPEDLFLD+ EP NTG LSFL GAA SAA
Sbjct: 147 VVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLSFLSGAATSAAVA 206
Query: 401 AVA 393
A +
Sbjct: 207 AAS 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,718,391
Number of Sequences: 1393205
Number of extensions: 10881564
Number of successful extensions: 40393
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 36514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40033
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
