Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011963A_C01 KMC011963A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565724.1| unknown protein; protein id: At2g31440.1, suppo... 148 6e-35
gb|AAM65980.1| unknown [Arabidopsis thaliana] 148 6e-35
pir||G84720 hypothetical protein At2g31440 [imported] - Arabidop... 55 5e-07
ref|NP_608710.1| presenilin stabilization factor CG2855-PA gi|72... 41 0.011
gb|AAO51573.1| similar to Dictyostelium discoideum (Slime mold).... 32 0.69
>ref|NP_565724.1| unknown protein; protein id: At2g31440.1, supported by cDNA: 6704.,
supported by cDNA: gi_17381289, supported by cDNA:
gi_20453378 [Arabidopsis thaliana]
gi|17381290|gb|AAL36063.1| At2g31440/T28P16.7
[Arabidopsis thaliana] gi|20198156|gb|AAD26475.2|
unknown protein [Arabidopsis thaliana]
gi|20453379|gb|AAM19928.1| At2g31440/T28P16.7
[Arabidopsis thaliana]
Length = 250
Score = 148 bits (373), Expect = 6e-35
Identities = 66/104 (63%), Positives = 84/104 (80%)
Frame = -2
Query: 604 YFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFNGYAEGNKVDQYFVPIVHFVAGAVTM 425
++V+RCS+VPFFL+SA+I LAFVTIHTFSMVIAF GYA+GNKVDQ VP++H AG +T+
Sbjct: 146 FYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTL 205
Query: 424 VNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLTENSIRLSNS 293
VN A GC +G+PLLY V LTL+HCG+M W+RL E+ + S S
Sbjct: 206 VNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLESRNQSSAS 249
>gb|AAM65980.1| unknown [Arabidopsis thaliana]
Length = 250
Score = 148 bits (373), Expect = 6e-35
Identities = 66/104 (63%), Positives = 84/104 (80%)
Frame = -2
Query: 604 YFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFNGYAEGNKVDQYFVPIVHFVAGAVTM 425
++V+RCS+VPFFL+SA+I LAFVTIHTFSMVIAF GYA+GNKVDQ VP++H AG +T+
Sbjct: 146 FYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTL 205
Query: 424 VNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLTENSIRLSNS 293
VN A GC +G+PLLY V LTL+HCG+M W+RL E+ + S S
Sbjct: 206 VNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLESRNQSSAS 249
>pir||G84720 hypothetical protein At2g31440 [imported] - Arabidopsis thaliana
Length = 127
Score = 55.5 bits (132), Expect = 5e-07
Identities = 34/94 (36%), Positives = 51/94 (54%)
Frame = -1
Query: 566 SFCTYWSCICHDSHILNGHRV*WVCRGQQSGSIFCSHCSFCCRSSDNGKFGTWGLYCWHS 387
S+ + SCIC+D HIL+GH VC+ +QS S S + C + D G+F L S
Sbjct: 2 SYSNHCSCICYDPHILDGHCFRRVCKREQSRSNNSSSHTPYCWNVDIGEFCIGRLCDRGS 61
Query: 386 SPLLRNVLDLDSLWEDGLEKIDRKLNQAEQLLVV 285
S L + D +LW++GL K+ K ++L V+
Sbjct: 62 SSLPCGIFDSCALWKNGLAKVVGKPEPKQRLTVI 95
>ref|NP_608710.1| presenilin stabilization factor CG2855-PA gi|7295913|gb|AAF51212.1|
CG2855-PA [Drosophila melanogaster]
gi|15291627|gb|AAK93082.1| LD12037p [Drosophila
melanogaster] gi|24637560|gb|AAN63815.1| presenilin
stabilization factor [Drosophila melanogaster]
Length = 238
Score = 41.2 bits (95), Expect = 0.011
Identities = 26/80 (32%), Positives = 40/80 (49%)
Frame = -2
Query: 574 FFLLSALIGLAFVTIHTFSMVIAFNGYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTV 395
FF+ SA L+ + +HTF VI FN + N + +V H +T++N A T
Sbjct: 146 FFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLITLLN-ANELYTT 204
Query: 394 GIPLLYFVTFLTLIHCGRMA 335
+ + Y VT LT + R+A
Sbjct: 205 TLLINYLVTILTGVLAFRVA 224
>gb|AAO51573.1| similar to Dictyostelium discoideum (Slime mold). Adenylyl cyclase
Length = 1212
Score = 32.3 bits (72), Expect(2) = 0.69
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 349 NESRSRTLRSKGEECQQYNPQVPNLPLSLLLQQNEQWEQNI 471
+E + LR + ++ QQ Q+P P+ LLLQQ +Q + +
Sbjct: 376 SEELNEQLRMQQQQRQQQQQQIPQQPMQLLLQQQQQQQAQL 416
Score = 21.6 bits (44), Expect(2) = 0.69
Identities = 7/22 (31%), Positives = 13/22 (58%)
Frame = +3
Query: 186 PNDDERNGNSTHSNQNGED*SN 251
PN + N N+ ++N N + +N
Sbjct: 349 PNHNNNNNNNNNNNNNNNNNNN 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,486,148
Number of Sequences: 1393205
Number of extensions: 11340433
Number of successful extensions: 38163
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 33742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37765
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
