Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011957A_C01 KMC011957A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P81406|GAPN_PEA NADP-dependent glyceraldehyde-3-phosphate deh... 379 e-104
pir||S43832 glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC ... 375 e-103
sp|P93338|GAPN_NICPL NADP-dependent glyceraldehyde-3-phosphate d... 369 e-101
gb|AAM00227.1|AF357884_1 glyceraldehyde-3-phosphate dehydrogenas... 359 2e-98
gb|AAF08296.1|AF196292_1 nonreversible glyceraldehyde-3-phosphat... 358 5e-98
>sp|P81406|GAPN_PEA NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
(Non-phosphorylating glyceraldehyde 3-phosphate
dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase
[NADP+]) (Triosephosphate dehydrogenase)
gi|4379384|emb|CAA53076.1| glyceraldehyde-3-phosphate
dehydrogenase (nonphosphorylating,NADP+) [Pisum sativum]
gi|28274680|gb|AAO38512.1| non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase [Pisum sativum]
Length = 496
Score = 379 bits (972), Expect = e-104
Identities = 187/201 (93%), Positives = 196/201 (97%)
Frame = +2
Query: 86 IVAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSA 265
++AEI+DG+V+KYYADGEWKKSTSGKSV+IINPTTRK QYKVQACSQEEVNKVMDSAKSA
Sbjct: 6 VLAEIIDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSA 65
Query: 266 QKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTA 445
QKSWAKTPLWKRAELLHKAAAILKEHK IAECLVKEIAKPAKDAVTEVVRSGDL+SY A
Sbjct: 66 QKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCA 125
Query: 446 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIA 625
EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGV+LAIPPFNYPVNLAVSKI PALIA
Sbjct: 126 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIA 185
Query: 626 GNSIVLKPPTQGAVSALHMVH 688
GNSIVLKPPTQGAV+ALHMVH
Sbjct: 186 GNSIVLKPPTQGAVAALHMVH 206
>pir||S43832 glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) -
garden pea
Length = 496
Score = 375 bits (962), Expect = e-103
Identities = 185/201 (92%), Positives = 194/201 (96%)
Frame = +2
Query: 86 IVAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSA 265
++AEI+DG+V+KYYADGEW KSTSGKSV+IINPTTRK QYKVQACSQEEVNKVMDSAKS
Sbjct: 6 VLAEIIDGDVYKYYADGEWNKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSP 65
Query: 266 QKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTA 445
QKSWAKTPLWKRAELLHKAAAILKEHK IAECLVKEIAKPAKDAVTEVVRSGDL+SY A
Sbjct: 66 QKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCA 125
Query: 446 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIA 625
EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGV+LAIPPFNYPVNLAVSKI PALIA
Sbjct: 126 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIA 185
Query: 626 GNSIVLKPPTQGAVSALHMVH 688
GNSIVLKPPTQGAV+ALHMVH
Sbjct: 186 GNSIVLKPPTQGAVAALHMVH 206
>sp|P93338|GAPN_NICPL NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
(Non-phosphorylating glyceraldehyde 3-phosphate
dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase
[NADP+]) (Triosephosphate dehydrogenase)
gi|1842115|gb|AAB47571.1| non-phosphorylating
glyceraldehyde dehydrogenase [Nicotiana plumbaginifolia]
Length = 496
Score = 369 bits (948), Expect = e-101
Identities = 179/201 (89%), Positives = 194/201 (96%)
Frame = +2
Query: 86 IVAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSA 265
+ +I++G+VFKYY++GEWKKS SGKSV+IINPTTRKTQYKVQAC+QEEVNKVM+ AK+A
Sbjct: 6 VFVDIIEGDVFKYYSEGEWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEVAKTA 65
Query: 266 QKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTA 445
QKSWAKTPLWKRAELLHKAAAILKEHK PIAECLVKEIAKPAKDAVTEVVRSGDL+SYTA
Sbjct: 66 QKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYTA 125
Query: 446 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIA 625
EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGV+LAIPPFNYPVNLAVSKI PALIA
Sbjct: 126 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIA 185
Query: 626 GNSIVLKPPTQGAVSALHMVH 688
GNS+VLKPPTQGAV+ LHMVH
Sbjct: 186 GNSLVLKPPTQGAVACLHMVH 206
>gb|AAM00227.1|AF357884_1 glyceraldehyde-3-phosphate dehydrogenase [Oryza sativa]
Length = 507
Score = 359 bits (922), Expect = 2e-98
Identities = 172/201 (85%), Positives = 193/201 (95%)
Frame = +2
Query: 86 IVAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSA 265
+ AEIL+GEV++YYADGEW+ S SGKSV+I+NPTTR TQY+VQAC+QEEVNKVM++AK A
Sbjct: 9 VFAEILEGEVYRYYADGEWRVSASGKSVAIVNPTTRLTQYRVQACTQEEVNKVMETAKVA 68
Query: 266 QKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTA 445
QK+WA+TPLWKRAELLHKAAAILKEHK PIAECLVKEIAKPAKDA++EVVRSGDL+SYTA
Sbjct: 69 QKAWARTPLWKRAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAISEVVRSGDLVSYTA 128
Query: 446 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIA 625
EEGVRILGEGK LVSDSFPGNER KYCL+SK+PLGVVLAIPPFNYPVNLAVSKIGPALIA
Sbjct: 129 EEGVRILGEGKLLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKIGPALIA 188
Query: 626 GNSIVLKPPTQGAVSALHMVH 688
GN++VLKPPTQGAV+ALHMVH
Sbjct: 189 GNALVLKPPTQGAVAALHMVH 209
>gb|AAF08296.1|AF196292_1 nonreversible glyceraldehyde-3-phosphate dehydrogenase [Apium
graveolens]
Length = 496
Score = 358 bits (918), Expect = 5e-98
Identities = 171/201 (85%), Positives = 191/201 (94%)
Frame = +2
Query: 86 IVAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSA 265
+ A+I++G+VFKYY+DGEWKKS+SGKSV+IINPTTR TQ+KVQAC+QEEVNK M++AK
Sbjct: 6 VYADIIEGDVFKYYSDGEWKKSSSGKSVAIINPTTRMTQFKVQACTQEEVNKAMETAKKV 65
Query: 266 QKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTA 445
QK WAKTPLWKRAELLHKAAAILKEHK IA+CLVKEIAKPAKD+VTEVVRSGDL+SY A
Sbjct: 66 QKQWAKTPLWKRAELLHKAAAILKEHKAAIADCLVKEIAKPAKDSVTEVVRSGDLVSYCA 125
Query: 446 EEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIA 625
EEGVR+LGEGKFLVSDSFPGNERTKYCLTSKIPLGV+LAIPPFNYPVNLAVSKIGPALIA
Sbjct: 126 EEGVRLLGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIGPALIA 185
Query: 626 GNSIVLKPPTQGAVSALHMVH 688
GN++VLKPPTQGAV+ LHMVH
Sbjct: 186 GNALVLKPPTQGAVACLHMVH 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,726,907
Number of Sequences: 1393205
Number of extensions: 14046869
Number of successful extensions: 42830
Number of sequences better than 10.0: 1404
Number of HSP's better than 10.0 without gapping: 40115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41762
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
