Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011946A_C01 KMC011946A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN17403.1| Unknown protein [Arabidopsis thaliana] 57 3e-07
gb|AAK20043.1|AC025783_3 unknown protein [Oryza sativa (japonica... 57 3e-07
ref|NP_683545.1| unknown protein; protein id: At3g10405.1 [Arabi... 54 1e-06
>gb|AAN17403.1| Unknown protein [Arabidopsis thaliana]
Length = 200
Score = 56.6 bits (135), Expect = 3e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3
Query: 551 GLKPAAFAALVPNSANKPLQELMEEIMGDHEMLVG 447
GL+P FAA+VPNSA+KP+ EL EEIMGDHE+L G
Sbjct: 162 GLEPVVFAAMVPNSADKPIFELTEEIMGDHELLTG 196
>gb|AAK20043.1|AC025783_3 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 56.6 bits (135), Expect = 3e-07
Identities = 27/34 (79%), Positives = 32/34 (93%)
Frame = -3
Query: 551 GLKPAAFAALVPNSANKPLQELMEEIMGDHEMLV 450
GL+PAAFAALVPNSA+K L E++EEIMGDHEML+
Sbjct: 168 GLEPAAFAALVPNSADKILGEVIEEIMGDHEMLL 201
>ref|NP_683545.1| unknown protein; protein id: At3g10405.1 [Arabidopsis thaliana]
Length = 225
Score = 54.3 bits (129), Expect = 1e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3
Query: 551 GLKPAAFAALVPNSANKPLQELMEEIMGDHEML 453
GL+P FAA+VPNSA+KP+ EL EEIMGDHE+L
Sbjct: 168 GLEPVVFAAMVPNSADKPIFELTEEIMGDHELL 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,822,717
Number of Sequences: 1393205
Number of extensions: 10504987
Number of successful extensions: 21444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21442
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
