Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011945A_C01 KMC011945A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplast precur... 176 2e-43
ref|NP_198266.1| ribosomal protein S1; protein id: At5g29771.1, ... 170 7e-42
ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus e... 79 4e-14
sp|P46228|RS1_SYNP6 30S ribosomal protein S1 gi|1075612|pir||S51... 69 2e-11
gb|ZP_00110690.1| hypothetical protein [Nostoc punctiforme] 68 6e-11
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplast precursor (CS1)
gi|322404|pir||A44121 ribosomal protein S1 precursor,
chloroplast - spinach gi|18060|emb|CAA46927.1| ribosomal
protein S1 [Spinacia oleracea] gi|170143|gb|AAA34045.1|
chloroplast ribosomal protein S1
Length = 411
Score = 176 bits (445), Expect = 2e-43
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = -2
Query: 498 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 319
MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML
Sbjct: 313 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 372
Query: 318 RFQPESGLTLSSDGILGPLGSDLPAEGLDLS 226
RFQPESGLTLSSDGILGPL SDLPAEGLDLS
Sbjct: 373 RFQPESGLTLSSDGILGPLTSDLPAEGLDLS 403
>ref|NP_198266.1| ribosomal protein S1; protein id: At5g29771.1, supported by cDNA:
4565., supported by cDNA: gi_13877938, supported by
cDNA: gi_16649088 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal
protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis
thaliana] gi|21593804|gb|AAM65771.1| ribosomal protein
S1 [Arabidopsis thaliana] gi|23296539|gb|AAN13122.1|
putative ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 170 bits (431), Expect = 7e-42
Identities = 85/91 (93%), Positives = 90/91 (98%)
Frame = -2
Query: 498 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 319
MILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML
Sbjct: 316 MILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 375
Query: 318 RFQPESGLTLSSDGILGPLGSDLPAEGLDLS 226
RFQPESGLTLSSDGILGPLGS+LP +G+DL+
Sbjct: 376 RFQPESGLTLSSDGILGPLGSELPDDGVDLT 406
>ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1
[Thermosynechococcus elongatus BP-1]
Length = 330
Score = 78.6 bits (192), Expect = 4e-14
Identities = 37/68 (54%), Positives = 51/68 (74%)
Frame = -2
Query: 498 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 319
MI+ D ERGR+SLSTK+LEP PGDM++NP+LV+EKAEEMA+ +RQ++ Q + A +
Sbjct: 248 MIIDLDAERGRISLSTKQLEPEPGDMVKNPQLVYEKAEEMAERYRQQLLQQQQQAAGE-- 305
Query: 318 RFQPESGL 295
PE G+
Sbjct: 306 --TPEEGM 311
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 gi|1075612|pir||S51485 ribosomal protein
S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1
[Synechococcus sp.]
Length = 307
Score = 69.3 bits (168), Expect = 2e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = -2
Query: 498 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 349
MI+ D ERGR+SLSTK+LEP PG M+RNP++V+EKAEEMA +R+++ Q
Sbjct: 249 MIIDLDAERGRISLSTKQLEPEPGLMVRNPEVVYEKAEEMAAQYREKLKQ 298
>gb|ZP_00110690.1| hypothetical protein [Nostoc punctiforme]
Length = 375
Score = 67.8 bits (164), Expect = 6e-11
Identities = 36/66 (54%), Positives = 47/66 (70%), Gaps = 6/66 (9%)
Frame = -2
Query: 498 MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI------AQAEAM 337
MI+ D ERGR+SLSTK+LEP PGDMI+N LV++KAEEMA +R+++ A A
Sbjct: 249 MIIDLDAERGRISLSTKQLEPEPGDMIKNRDLVYDKAEEMAAKYREQLLAKQQGATAAPA 308
Query: 336 ARADML 319
A AD+L
Sbjct: 309 APADVL 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,024,085
Number of Sequences: 1393205
Number of extensions: 8924610
Number of successful extensions: 23282
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 22468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23259
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
