Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011889A_C01 KMC011889A_c01
(1088 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566371.1| expressed protein; protein id: At3g10260.1, sup... 312 5e-84
gb|AAK09242.1|AC084320_29 unknown protein [Oryza sativa (japonic... 286 5e-76
dbj|BAC21398.1| hypothetical protein~similar to Oryza sativa chr... 271 1e-71
dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-gro... 218 1e-55
dbj|BAB89453.1| OSJNBb0021A09.5 [Oryza sativa (japonica cultivar... 218 2e-55
>ref|NP_566371.1| expressed protein; protein id: At3g10260.1, supported by cDNA:
15153., supported by cDNA: gi_20259182 [Arabidopsis
thaliana] gi|6056199|gb|AAF02816.1|AC009400_12 unknown
protein [Arabidopsis thaliana] gi|15027947|gb|AAK76504.1|
unknown protein [Arabidopsis thaliana]
gi|20259183|gb|AAM14307.1| unknown protein [Arabidopsis
thaliana] gi|21553569|gb|AAM62662.1| unknown [Arabidopsis
thaliana]
Length = 247
Score = 312 bits (800), Expect = 5e-84
Identities = 152/249 (61%), Positives = 192/249 (77%), Gaps = 2/249 (0%)
Frame = -1
Query: 1013 MSDKITAENLLNTLVETISHA--EHKKSVSFFEEEKPNSVSSQFNRLFGRQKPVHHLLGG 840
M DK E+++ LV+ + ++K SFFE+E +SVSS+FNRLF RQKP+HH+LGG
Sbjct: 1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQE--DSVSSRFNRLFDRQKPIHHVLGG 58
Query: 839 GKSADVLLWRNKKISAGVLTGATAIWVVWEWLNYNFLTLLFLALALGMLAQFLWANASGV 660
GKSADVLLWRNKKISA VL GATAIWV++EW+N++FL+L+ AL LGM+AQF+W+NASG
Sbjct: 59 GKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGF 118
Query: 659 LGRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKQFLLVVVSLWAGAV 480
L R S+VPR VLP+DF + AVG EVNRGL LQD +C GNLKQFL+ V+ LW A+
Sbjct: 119 LNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAM 178
Query: 479 IGSWCNFLTVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGLLSKIPN 300
+GS CNFLTV+YIGFV AHT PVLYERYED+VD F+ + + + Y+KLD+G LS+IP+
Sbjct: 179 VGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPS 238
Query: 299 GKFKGKKHE 273
GKF KK E
Sbjct: 239 GKFGLKKRE 247
>gb|AAK09242.1|AC084320_29 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 247
Score = 286 bits (731), Expect = 5e-76
Identities = 140/240 (58%), Positives = 176/240 (73%)
Frame = -1
Query: 992 ENLLNTLVETISHAEHKKSVSFFEEEKPNSVSSQFNRLFGRQKPVHHLLGGGKSADVLLW 813
E +++++++TI+ K+ F+ + + +LFGRQK +H +LGGGK ADVLLW
Sbjct: 10 EKIMSSIMDTIAENLPKQKSGKFDVGAASDKMKE--KLFGRQKTIHRVLGGGKPADVLLW 67
Query: 812 RNKKISAGVLTGATAIWVVWEWLNYNFLTLLFLALALGMLAQFLWANASGVLGRKSSKVP 633
RNKKIS+ VL ATAIWV +EWL+Y+FLT++ AL LGM+ QF+W+N S L SKVP
Sbjct: 68 RNKKISSSVLALATAIWVFFEWLDYHFLTIVSFALVLGMVVQFVWSNFSSALSGSPSKVP 127
Query: 632 RFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKQFLLVVVSLWAGAVIGSWCNFLT 453
R LPE+ VNIA AVG +VN+ L LQD SC NLK F+L +V LWA AVIG WCNFLT
Sbjct: 128 RVELPEELFVNIAVAVGTQVNKFLSFLQDVSCERNLKHFVLAIVGLWAAAVIGGWCNFLT 187
Query: 452 VMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGLLSKIPNGKFKGKKHE 273
V+YIGFV+AHT PVLYE+YEDQVDDF+Y LG +R+QYQKLD G+LSKIP G K KK E
Sbjct: 188 VIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQGVLSKIPKGNMKFKKSE 247
>dbj|BAC21398.1| hypothetical protein~similar to Oryza sativa chromosome3,
OSJNBa0091J19.7 [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 271 bits (693), Expect = 1e-71
Identities = 131/241 (54%), Positives = 174/241 (71%)
Frame = -1
Query: 995 AENLLNTLVETISHAEHKKSVSFFEEEKPNSVSSQFNRLFGRQKPVHHLLGGGKSADVLL 816
A N+++++V+ I+ K+ FE+ S+S Q RLFG QK VHH+LGGGKSADVLL
Sbjct: 9 AANIVDSIVDAIADNLPKQKSVRFED---GSISDQAKRLFGGQKSVHHVLGGGKSADVLL 65
Query: 815 WRNKKISAGVLTGATAIWVVWEWLNYNFLTLLFLALALGMLAQFLWANASGVLGRKSSKV 636
WRNKKIS+ VL ATA+WV +EWL+Y+FLT+ L LGM+ QF W+ +G+L SKV
Sbjct: 66 WRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLNGSPSKV 125
Query: 635 PRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKQFLLVVVSLWAGAVIGSWCNFL 456
PR LP++ NI +A+G +VN+ L LQD SCG +LK FLLV+ +A A+IGSWCN L
Sbjct: 126 PRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLL 185
Query: 455 TVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGLLSKIPNGKFKGKKH 276
TV+YIGFV AHT PVLYE+ +++VD+F+Y LG ++NQYQKLD G+L K+P G K KK
Sbjct: 186 TVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGIIKLKKS 245
Query: 275 E 273
+
Sbjct: 246 D 246
>dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-group)]
gi|20804416|dbj|BAB92114.1| P0443E07.17 [Oryza sativa
(japonica cultivar-group)]
Length = 279
Score = 218 bits (555), Expect = 1e-55
Identities = 99/203 (48%), Positives = 142/203 (69%)
Frame = -1
Query: 884 RLFGRQKPVHHLLGGGKSADVLLWRNKKISAGVLTGATAIWVVWEWLNYNFLTLLFLALA 705
RLFGR++P+H +LGGGK ADV LWRN+ ISAGVL GATAIW+++E L Y+ LT + L
Sbjct: 77 RLFGREEPIHKVLGGGKPADVFLWRNRNISAGVLGGATAIWILFELLGYHLLTFVCHGLI 136
Query: 704 LGMLAQFLWANASGVLGRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNL 525
+ FLW+NAS + + ++P ++PED +VNIA + +E+NR L+ + G ++
Sbjct: 137 FSLGLLFLWSNASSFINKSPPRIPEVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDI 196
Query: 524 KQFLLVVVSLWAGAVIGSWCNFLTVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRN 345
K+FL+V+ LW +V+GS CNFLT++YI FV HT P+LYE+YEDQ+D + K +++
Sbjct: 197 KKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKK 256
Query: 344 QYQKLDSGLLSKIPNGKFKGKKH 276
QY LD+ +LSK+P G K KKH
Sbjct: 257 QYAVLDAKVLSKVPRGPLKDKKH 279
>dbj|BAB89453.1| OSJNBb0021A09.5 [Oryza sativa (japonica cultivar-group)]
Length = 253
Score = 218 bits (554), Expect = 2e-55
Identities = 113/254 (44%), Positives = 161/254 (62%), Gaps = 8/254 (3%)
Frame = -1
Query: 1013 MSDKITAENLLNTLVETISHAEHKKSVSFFEEEKPNSVSS--------QFNRLFGRQKPV 858
M++ ++++ L E + H + S S +++K S SS + RLFGR++PV
Sbjct: 1 MAEHKEEQSVMEKLSEKL-HGDSSSSSSDSDDDKKGSSSSSAAAAMKAKIYRLFGRERPV 59
Query: 857 HHLLGGGKSADVLLWRNKKISAGVLTGATAIWVVWEWLNYNFLTLLFLALALGMLAQFLW 678
H +LGGGK AD++LWRNKKIS GVL GATAIW+++E + Y+ LTL+ L L + FLW
Sbjct: 60 HSVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIMEYHLLTLVCHCLILSLAVLFLW 119
Query: 677 ANASGVLGRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKQFLLVVVS 498
+NAS + + +P +PED VNIA ++ +E+NRG L++ G +LK+FL+V+
Sbjct: 120 SNASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIAG 179
Query: 497 LWAGAVIGSWCNFLTVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGL 318
LW +V+GS CNFLT+ YI FVA +T PVLYE+YED+VD F K + + Y +
Sbjct: 180 LWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYALFEEKC 239
Query: 317 LSKIPNGKFKGKKH 276
LSKIP G K KKH
Sbjct: 240 LSKIPKGPLKDKKH 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 972,128,216
Number of Sequences: 1393205
Number of extensions: 22398909
Number of successful extensions: 65452
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 61105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64906
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65065653414
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
