Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011861A_C02 KMC011861A_c02
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62344.1|AF506028_11 CTV.15 [Poncirus trifoliata] 110 2e-23
gb|AAM67211.1| serine-rich protein [Arabidopsis thaliana] 108 5e-23
ref|NP_197910.1| serine-rich protein; protein id: At5g25280.1 [A... 108 5e-23
ref|NP_196670.1| putative protein; protein id: At5g11090.1, supp... 107 1e-22
ref|NP_197537.1| putative protein; protein id: At5g20370.1 [Arab... 47 2e-04
>gb|AAN62344.1|AF506028_11 CTV.15 [Poncirus trifoliata]
Length = 206
Score = 110 bits (274), Expect = 2e-23
Identities = 59/83 (71%), Positives = 68/83 (81%), Gaps = 4/83 (4%)
Frame = -2
Query: 563 LHKHTGNNNSNTDSCPSN----RLNMRRSAMKNSLVRIGGVEGEWVKRALTALIRPSSHQ 396
LHK T + +S+ + S+ RLN RRSAM NSLVRIGGVEGE VKRALTALIRPSSHQ
Sbjct: 124 LHKRTNSYSSHKTASSSHYSSSRLNYRRSAMTNSLVRIGGVEGELVKRALTALIRPSSHQ 183
Query: 395 QRRRSAYEPRPSRLSVMTKAADL 327
QRRR+A+EPRPSRLS+M+KA DL
Sbjct: 184 QRRRAAFEPRPSRLSIMSKADDL 206
>gb|AAM67211.1| serine-rich protein [Arabidopsis thaliana]
Length = 220
Score = 108 bits (270), Expect = 5e-23
Identities = 57/80 (71%), Positives = 64/80 (79%), Gaps = 1/80 (1%)
Frame = -2
Query: 563 LHKHTGN-NNSNTDSCPSNRLNMRRSAMKNSLVRIGGVEGEWVKRALTALIRPSSHQQRR 387
LHK+ N + T S +N LNMRRSAM NSLVRIGGVEGEWV+RALT LIRPSSHQ +R
Sbjct: 141 LHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKR 200
Query: 386 RSAYEPRPSRLSVMTKAADL 327
RSAYEPR SRL+ M+KA DL
Sbjct: 201 RSAYEPRRSRLASMSKAEDL 220
>ref|NP_197910.1| serine-rich protein; protein id: At5g25280.1 [Arabidopsis thaliana]
gi|15146224|gb|AAK83595.1| AT5g25280/F18G18_20
[Arabidopsis thaliana] gi|15529141|gb|AAK97665.1|
AT5g25280/F18G18_20 [Arabidopsis thaliana]
gi|16974351|gb|AAL31101.1| AT5g25280/F18G18_20
[Arabidopsis thaliana]
Length = 220
Score = 108 bits (270), Expect = 5e-23
Identities = 57/80 (71%), Positives = 64/80 (79%), Gaps = 1/80 (1%)
Frame = -2
Query: 563 LHKHTGN-NNSNTDSCPSNRLNMRRSAMKNSLVRIGGVEGEWVKRALTALIRPSSHQQRR 387
LHK+ N + T S +N LNMRRSAM NSLVRIGGVEGEWV+RALT LIRPSSHQ +R
Sbjct: 141 LHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKR 200
Query: 386 RSAYEPRPSRLSVMTKAADL 327
RSAYEPR SRL+ M+KA DL
Sbjct: 201 RSAYEPRRSRLASMSKAEDL 220
>ref|NP_196670.1| putative protein; protein id: At5g11090.1, supported by cDNA:
32958. [Arabidopsis thaliana] gi|11358372|pir||T51798
hypothetical protein T5K6_80 - Arabidopsis thaliana
gi|9795161|emb|CAC03457.1| putative protein [Arabidopsis
thaliana] gi|21592828|gb|AAM64778.1| serine-rich protein
[Arabidopsis thaliana] gi|28466931|gb|AAO44074.1|
At5g11090 [Arabidopsis thaliana]
Length = 217
Score = 107 bits (266), Expect = 1e-22
Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Frame = -2
Query: 563 LHKHTGN-NNSNTDSCPSNRLNMRRSAMKNSLVRIGGVEGEWVKRALTALIRPSSHQQRR 387
LHK+ N + T S +N LNMRRSAM NSLVRIGGVEGEWV+RALT LIRPSSH +R
Sbjct: 138 LHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHHLKR 197
Query: 386 RSAYEPRPSRLSVMTKA 336
R+AY+PRPSRLS+M KA
Sbjct: 198 RAAYQPRPSRLSIMAKA 214
>ref|NP_197537.1| putative protein; protein id: At5g20370.1 [Arabidopsis thaliana]
Length = 175
Score = 46.6 bits (109), Expect = 2e-04
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = -2
Query: 545 NNNSNTDSCPSNRLNMRRSAMKNSLVRIGGVEGEWVKRALTA-LIRPSSHQQRRRSAYEP 369
NN + + LN+R+ A+ NSL +IG VE E +R+L A L +PSS RR + P
Sbjct: 106 NNRGDNTIRVNVGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRP 165
Query: 368 RPSR 357
R SR
Sbjct: 166 RLSR 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,738,347
Number of Sequences: 1393205
Number of extensions: 12721807
Number of successful extensions: 87109
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 57615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79729
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
