Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011792A_C01 KMC011792A_c01
(839 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192427.1| oxygen-evolving complex protein 16, chloroplast... 288 9e-77
sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chlorop... 287 1e-76
sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chlorop... 272 5e-72
ref|NP_193860.1| oxygen-evolving complex protein 16, chloroplast... 265 6e-70
emb|CAB40384.1| 16 kDa polypeptide of oxygen-evolving complex [A... 247 1e-64
>ref|NP_192427.1| oxygen-evolving complex protein 16, chloroplast precursor (OEC16);
protein id: At4g05180.1, supported by cDNA: 40326.,
supported by cDNA: gi_13926287 [Arabidopsis thaliana]
gi|18206249|sp|Q41932|PSQ2_ARATH Oxygen-evolving
enhancer protein 3-2, chloroplast precursor (OEE3) (16
kDa subunit of oxygen evolving system of photosystem II)
(OEC 16 kDa subunit) gi|25346435|pir||B85065
hypothetical protein AT4g05180 [imported] - Arabidopsis
thaliana gi|7267278|emb|CAB81060.1| Oxygen-evolving
enhancer protein 3 precursor-like protein [Arabidopsis
thaliana] gi|13926288|gb|AAK49613.1|AF372897_1
AT4g05180/C17L7_100 [Arabidopsis thaliana]
gi|21593587|gb|AAM65554.1| Oxygen-evolving enhancer
protein 3 precursor-like protein [Arabidopsis thaliana]
gi|23308489|gb|AAN18214.1| At4g05180/C17L7_100
[Arabidopsis thaliana]
Length = 230
Score = 288 bits (736), Expect = 9e-77
Identities = 158/235 (67%), Positives = 183/235 (77%)
Frame = -1
Query: 833 MAQAMASSGWFTWFISRLCWEGSLQVSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPSE 654
MAQA+ S S+ EGSLQ++GS RLNI S S T L +RA Q S
Sbjct: 1 MAQAVTSMAGLRG-ASQAVLEGSLQINGSNRLNISRVSVGSQR----TGLVIRAQQNVSV 55
Query: 653 PQSSRRAGMGLVAAWLATGSLVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELPL 474
P+SSRR+ +GLVAA LA GS V+AV AEA IKVGGPP SGGLPGT NSD+ARD L L
Sbjct: 56 PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115
Query: 473 KERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVIS 294
K+RF++QPLSPTEAA RAK+SAKEI+ VK FID+KAWPYVQNDLRLRASYLRYDLNTVIS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175
Query: 293 SKPKDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 129
+KPK++KQSLK+L+AKLFQ I NLDYAA+ KSSP AEKYY+E VS+LN+VL KLG
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3)
(16 kDa subunit of oxygen evolving system of photosystem
II) (OEC 16 kDa subunit) gi|2565417|gb|AAB81994.1|
oxygen-evolving enhancer protein 3 precursor [Onobrychis
viciifolia]
Length = 231
Score = 287 bits (735), Expect = 1e-76
Identities = 171/246 (69%), Positives = 188/246 (75%), Gaps = 11/246 (4%)
Frame = -1
Query: 833 MAQAMASSGWFTWFISRLCWEGSLQV-SGSTRLNIHSSSSSSNSRVSSTRLTVRANQVP- 660
MAQAMAS EGSLQ+ SGS R SSSSS +R + VRA Q
Sbjct: 1 MAQAMASG----------LLEGSLQLMSGSNR-----SSSSSRTRGPAGVFIVRAQQQEQ 45
Query: 659 --------SEPQSSRRAGMGLVAAWLATGSLVQAVLAEAKSIKVGGPPPLSGGLPGTLNS 504
++PQS+RRA +GLVA LA+ S VQAVLAEAK IKVGGPPP SGGL GTLNS
Sbjct: 46 QQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNS 105
Query: 503 DEARDLELPLKERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASY 324
DEARDL+LPLKERF++QPLSPTEAAQR +ESAKEIVAVKKFIDQK NDLRLRASY
Sbjct: 106 DEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASY 165
Query: 323 LRYDLNTVISSKPKDQKQSLKELSA-KLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLND 147
LRYDLNTVISSKPK+QKQSLKE SA KLFQDI NLDYAAK+KS+PQAEKYYA+AVSTLND
Sbjct: 166 LRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLND 225
Query: 146 VLGKLG 129
VL K+G
Sbjct: 226 VLSKIG 231
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3)
(16 kDa subunit of oxygen evolving system of photosystem
II) (OEC 16 kDa subunit) gi|81480|pir||S00008
photosystem II oxygen-evolving complex protein 3
precursor - spinach gi|755802|emb|CAA29056.1| 16 kDa
protein of the photosynthetic oxygen- evolving protein
(OEC) [Spinacia oleracea] gi|225597|prf||1307179B
luminal protein 16kD
Length = 232
Score = 272 bits (695), Expect = 5e-72
Identities = 150/236 (63%), Positives = 181/236 (76%), Gaps = 1/236 (0%)
Frame = -1
Query: 833 MAQAMASSGWFTWFISRLCWEGSLQVSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPSE 654
MAQAMAS S+ EGSLQ+SGS RL S ++S V L +RA QV +E
Sbjct: 1 MAQAMASMAGLRG-ASQAVLEGSLQISGSNRL---SGPTTSRVAVPKMGLNIRAQQVSAE 56
Query: 653 PQSSRRAGMGLVAAWLATGSLVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELPL 474
++SRRA +G VAA LA+GS V+AVLAEA+ I VG PPPLSGGLPGT NSD+ARD LP
Sbjct: 57 AETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPY 116
Query: 473 -KERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVI 297
K+RF+LQPL PTEAAQRAK SA EI+ VK+FID+KAWP +QNDLRLRASYLRYDL TVI
Sbjct: 117 TKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 176
Query: 296 SSKPKDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 129
S+KPKD+K+SL+EL++KLF I NLD+AAK+KS +AEKYY + VS +N+VL KLG
Sbjct: 177 SAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232
>ref|NP_193860.1| oxygen-evolving complex protein 16, chloroplast precursor (OEC16);
protein id: At4g21280.1, supported by cDNA: 5691.,
supported by cDNA: gi_15215599, supported by cDNA:
gi_20334895 [Arabidopsis thaliana]
gi|12643255|sp|Q9XFT3|PSQ1_ARATH Oxygen-evolving
enhancer protein 3-1, chloroplast precursor (OEE3) (16
kDa subunit of oxygen evolving system of photosystem II)
(OEC 16 kDa subunit) gi|7488013|pir||T04959 photosystem
II oxygen-evolving complex protein 3 - Arabidopsis
thaliana gi|2911085|emb|CAA17547.1| photosystem II
oxygen-evolving complex protein 3-like [Arabidopsis
thaliana] gi|3402748|emb|CAA20194.1| photosystem II
oxygen-evolving complex protein 3-like [Arabidopsis
thaliana] gi|7268925|emb|CAB79128.1| photosystem II
oxygen-evolving complex protein 3-like [Arabidopsis
thaliana] gi|15215600|gb|AAK91345.1| AT4g21280/F7J7_220
[Arabidopsis thaliana] gi|20334896|gb|AAM16204.1|
AT4g21280/F7J7_220 [Arabidopsis thaliana]
gi|21593902|gb|AAM65869.1| photosystem II
oxygen-evolving complex protein 3-like [Arabidopsis
thaliana]
Length = 223
Score = 265 bits (677), Expect = 6e-70
Identities = 144/215 (66%), Positives = 168/215 (77%)
Frame = -1
Query: 773 EGSLQVSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPSEPQSSRRAGMGLVAAWLATGS 594
EGSL+++GS+RLN S + +RL VRA Q ++SRR+ +GLVAA LA GS
Sbjct: 16 EGSLKINGSSRLN----GSGRVAVAQRSRLVVRAQQ---SEETSRRSVIGLVAAGLAGGS 68
Query: 593 LVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELPLKERFFLQPLSPTEAAQRAKE 414
VQAVLA+A SIKVG PP SGGLPGT NSD+ARD L LK+RF+LQPL PTEAA RAKE
Sbjct: 69 FVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKE 128
Query: 413 SAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVISSKPKDQKQSLKELSAKLFQD 234
SAK+I+ VK ID+KAWPYVQNDLR +ASYLRYDLNT+ISSKPKD+K+SLK+L+ KLF
Sbjct: 129 SAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDT 188
Query: 233 ISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 129
I NLDYAAK KS QAEKYYAE VS LN+VL KLG
Sbjct: 189 IDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 223
>emb|CAB40384.1| 16 kDa polypeptide of oxygen-evolving complex [Arabidopsis
thaliana]
Length = 216
Score = 247 bits (631), Expect = 1e-64
Identities = 138/215 (64%), Positives = 162/215 (75%)
Frame = -1
Query: 773 EGSLQVSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPSEPQSSRRAGMGLVAAWLATGS 594
EGSL+++GS+RLN S + +RL VRA Q ++SRR+ +GLVAA LA GS
Sbjct: 16 EGSLKINGSSRLN----GSGRVAVAQRSRLVVRAQQ---SEETSRRSVIGLVAAGLAGGS 68
Query: 593 LVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELPLKERFFLQPLSPTEAAQRAKE 414
VQAVLA+A SIKVG PP SGGLPGT NSD+ARD L LK+RF+LQPL PTEAA RAKE
Sbjct: 69 FVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKE 128
Query: 413 SAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVISSKPKDQKQSLKELSAKLFQD 234
SAK+I+ VK ID+KAWPYVQNDLR +ASYLRYDLNT+ISSKPKD+K+SLK+L+ KLF
Sbjct: 129 SAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDT 188
Query: 233 ISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 129
I N KS QAEKYYAE VS LN+VL KLG
Sbjct: 189 IDN-------KSPSQAEKYYAETVSALNEVLAKLG 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 737,657,955
Number of Sequences: 1393205
Number of extensions: 16631455
Number of successful extensions: 67772
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 55287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65053
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
