Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011777A_C01 KMC011777A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197570.1| putative protein; protein id: At5g20700.1 [Arab... 57 5e-15
pir||B96779 unknown protein F9E10.21 [imported] - Arabidopsis th... 59 4e-08
gb|AAM64456.1| unknown [Arabidopsis thaliana] 59 4e-08
ref|NP_565095.1| expressed protein; protein id: At1g74940.1, sup... 59 4e-08
ref|NP_173354.1| hypothetical protein; protein id: At1g19200.1 [... 52 6e-06
>ref|NP_197570.1| putative protein; protein id: At5g20700.1 [Arabidopsis thaliana]
gi|26449772|dbj|BAC42009.1| unknown protein [Arabidopsis
thaliana]
Length = 248
Score = 57.4 bits (137), Expect(2) = 5e-15
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = -2
Query: 539 EPEPLFPTSNFLSSCNLCAKKLHGQDIYMYRGEKGFCSPD 420
E P F FL+SC LC KKLHGQDI++YRGEK FCS +
Sbjct: 172 ENSPEFQGLGFLNSCYLCRKKLHGQDIFIYRGEKAFCSTE 211
Score = 45.1 bits (105), Expect(2) = 5e-15
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = -3
Query: 439 KDFAAQTCRSSQIMMDERQEVCRSEASVELSSSPYTTREQIFSTGIL 299
K F + CRSS I DER+E CRS + S+SPYT QIFSTG+L
Sbjct: 205 KAFCSTECRSSHIANDERKERCRS----KFSTSPYTA-GQIFSTGVL 246
>pir||B96779 unknown protein F9E10.21 [imported] - Arabidopsis thaliana
gi|5882729|gb|AAD55282.1|AC008263_13 ESTs gb|T04387,
gb|R84022 and gb|T42239 come from this gene.
[Arabidopsis thaliana]
gi|12323906|gb|AAG51932.1|AC013258_26 unknown protein;
57035-56302 [Arabidopsis thaliana]
Length = 206
Score = 59.3 bits (142), Expect = 4e-08
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = -2
Query: 551 PPPFEPEPLFPTSNFLSSCNLCAKKLHGQDIYMYRGEKGFCSPDV-SIQSDND 396
PP E + + + FLSSC LC KKL G+DIYMY+GE GFCS + S+Q ND
Sbjct: 120 PPVIERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMND 172
>gb|AAM64456.1| unknown [Arabidopsis thaliana]
Length = 222
Score = 59.3 bits (142), Expect = 4e-08
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = -2
Query: 551 PPPFEPEPLFPTSNFLSSCNLCAKKLHGQDIYMYRGEKGFCSPDV-SIQSDND 396
PP E + + + FLSSC LC KKL G+DIYMY+GE GFCS + S+Q ND
Sbjct: 136 PPVIERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMND 188
Score = 40.0 bits (92), Expect = 0.023
Identities = 26/93 (27%), Positives = 45/93 (47%), Gaps = 2/93 (2%)
Frame = -3
Query: 574 LVFLEEPHPPLLSLNPCFPPRIFSVHVIYVRRSFMARIYTCTEERKDFAAQTCRSSQIMM 395
+V ++EP P++ P F ++ + + F + CRS QIM
Sbjct: 130 MVIVDEP--PVIERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMN 187
Query: 394 DERQEVCRSEAS--VELSSSPYTTREQIFSTGI 302
DERQE C+++ S ++ SSPY +++ S G+
Sbjct: 188 DERQEQCKTQVSRNADVLSSPYAAGQRL-SAGV 219
>ref|NP_565095.1| expressed protein; protein id: At1g74940.1, supported by cDNA:
24864. [Arabidopsis thaliana] gi|23306420|gb|AAN17437.1|
expressed protein [Arabidopsis thaliana]
gi|27311889|gb|AAO00910.1| expressed protein
[Arabidopsis thaliana]
Length = 222
Score = 59.3 bits (142), Expect = 4e-08
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = -2
Query: 551 PPPFEPEPLFPTSNFLSSCNLCAKKLHGQDIYMYRGEKGFCSPDV-SIQSDND 396
PP E + + + FLSSC LC KKL G+DIYMY+GE GFCS + S+Q ND
Sbjct: 136 PPVIERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMND 188
>ref|NP_173354.1| hypothetical protein; protein id: At1g19200.1 [Arabidopsis
thaliana]
Length = 215
Score = 52.0 bits (123), Expect = 6e-06
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -2
Query: 548 PPFEPEPLFPTSNFLSSCNLCAKKLHGQDIYMYRGEKGFCSPD 420
P E L +FL+SC LC KKL G+DIYMY+G++GFCS +
Sbjct: 137 PAKERRVLRDCPDFLTSCCLCKKKLQGKDIYMYKGDEGFCSKE 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,794,321
Number of Sequences: 1393205
Number of extensions: 11855539
Number of successful extensions: 36796
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 33199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36613
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
