Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011772A_C01 KMC011772A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565276.1| expressed protein; protein id: At2g01710.1, sup... 71 9e-12
gb|AAM63081.1| unknown [Arabidopsis thaliana] 71 9e-12
ref|NP_201241.1| putative protein; protein id: At5g64360.1 [Arab... 64 2e-09
gb|AAK83612.1| AT5g64360/MSJ1_20 [Arabidopsis thaliana] 64 2e-09
ref|NP_196516.1| putative protein; protein id: At5g09540.1 [Arab... 61 1e-08
>ref|NP_565276.1| expressed protein; protein id: At2g01710.1, supported by cDNA:
19157., supported by cDNA: gi_15529207 [Arabidopsis
thaliana] gi|25410924|pir||B84428 hypothetical protein
At2g01710 [imported] - Arabidopsis thaliana
gi|4220477|gb|AAD12700.1| expressed protein [Arabidopsis
thaliana] gi|15529208|gb|AAK97698.1| At2g01710/T8O11.12
[Arabidopsis thaliana] gi|22655052|gb|AAM98117.1|
At2g01710/T8O11.12 [Arabidopsis thaliana]
Length = 311
Score = 71.2 bits (173), Expect = 9e-12
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 603 SSFWTMCPYCWYLHEYEKKYEDCTFRCGNCLRTFHGLEVKAPAAETVVQGKDEYYC 436
S+FWT CPYC+ LHEY + Y++ RC NC R FH + P ++ GKDEYYC
Sbjct: 164 STFWTACPYCYSLHEYPRVYQEYCIRCQNCQRAFHAASI--PQLPPLIPGKDEYYC 217
>gb|AAM63081.1| unknown [Arabidopsis thaliana]
Length = 311
Score = 71.2 bits (173), Expect = 9e-12
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 603 SSFWTMCPYCWYLHEYEKKYEDCTFRCGNCLRTFHGLEVKAPAAETVVQGKDEYYC 436
S+FWT CPYC+ LHEY + Y++ RC NC R FH + P ++ GKDEYYC
Sbjct: 164 STFWTACPYCYSLHEYPRVYQEYCIRCQNCQRAFHAASI--PQLPPLIPGKDEYYC 217
>ref|NP_201241.1| putative protein; protein id: At5g64360.1 [Arabidopsis thaliana]
Length = 464
Score = 63.5 bits (153), Expect = 2e-09
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = -1
Query: 603 SSFWTMCPYCWYLHEYEKKYEDCTFRCGNCLRTFHGLEVKAPAAETVVQGKDEYYCYHLS 424
+SFWT CPYC+ L EY K YE+CT +C C R F + + P + +D Y+C
Sbjct: 193 TSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIPKPPVDK-KDDEDVYFCSWAL 251
Query: 423 LPLRY 409
PL +
Sbjct: 252 FPLGF 256
>gb|AAK83612.1| AT5g64360/MSJ1_20 [Arabidopsis thaliana]
Length = 330
Score = 63.5 bits (153), Expect = 2e-09
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = -1
Query: 603 SSFWTMCPYCWYLHEYEKKYEDCTFRCGNCLRTFHGLEVKAPAAETVVQGKDEYYCYHLS 424
+SFWT CPYC+ L EY K YE+CT +C C R F + + P + +D Y+C
Sbjct: 193 TSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIPKPPVDK-KDDEDVYFCSWAL 251
Query: 423 LPLRY 409
PL +
Sbjct: 252 FPLGF 256
>ref|NP_196516.1| putative protein; protein id: At5g09540.1 [Arabidopsis thaliana]
gi|11357509|pir||T49944 hypothetical protein F17I14.270
- Arabidopsis thaliana gi|7671435|emb|CAB89376.1|
putative protein [Arabidopsis thaliana]
Length = 280
Score = 60.8 bits (146), Expect = 1e-08
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = -1
Query: 603 SSFWTMCPYCWYLHEYEKKYEDCTFRCGNCLRTFHGLEVKAPAAETVVQG 454
+SFWT CPYC+ L EY K YE+CT RC C + F ++ + P E+ +G
Sbjct: 169 TSFWTACPYCFSLFEYPKGYEECTLRCQQCRKAFEAVKTQTPPVESNGEG 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,766,508
Number of Sequences: 1393205
Number of extensions: 12748365
Number of successful extensions: 120479
Number of sequences better than 10.0: 405
Number of HSP's better than 10.0 without gapping: 65358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106018
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
