Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011662A_C01 KMC011662A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_525058.2| roughest CG4125-PA gi|22833004|gb|AAF45845.2| C... 33 4.9
gb|AAM75049.1| RE01586p [Drosophila melanogaster] 33 4.9
sp|Q08180|ICCR_DROME Irregular chiasm C-roughest protein precurs... 33 4.9
ref|NP_702483.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.4
ref|XP_217651.1| similar to LD34222p [Drosophila melanogaster] [... 32 8.4
>ref|NP_525058.2| roughest CG4125-PA gi|22833004|gb|AAF45845.2| CG4125-PA [Drosophila
melanogaster]
Length = 764
Score = 32.7 bits (73), Expect = 4.9
Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Frame = +1
Query: 94 FSSIKTDDINTQIQSSFQKT*YDKPGSPQ------TQRTHKKTYIQR*VIHYNNLQLKHQ 255
+S +K D + T Y P PQ T+ T +Q H N LQL+ Q
Sbjct: 594 YSDLKVDISGGYVPYGDYSTHYSPP--PQYLTTCSTKSNGSSTIMQN--NHQNQLQLQQQ 649
Query: 256 RQ*SPIQHHLHLIQLSTNTLILLITQHSNEQFMAGSLVSKLGTEEEF---SLSSTFFGGF 426
+Q S QHH T TL + +S+ + GS++ ++ SL ST
Sbjct: 650 QQQSHHQHH-----TQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGLPSLQSTTASVV 704
Query: 427 SSGAN-SCGIDSFSKDLIHTNMELPMLTQDIAFPTSY--VYSSPEKHQLKSKTFP 582
SS N SC S + T + + ++ Y +Y +P S P
Sbjct: 705 SSSPNGSCSNQSTTAATTTTTHVVVPSSMALSVDPRYSAIYGNPYLRSSNSSLLP 759
>gb|AAM75049.1| RE01586p [Drosophila melanogaster]
Length = 764
Score = 32.7 bits (73), Expect = 4.9
Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Frame = +1
Query: 94 FSSIKTDDINTQIQSSFQKT*YDKPGSPQ------TQRTHKKTYIQR*VIHYNNLQLKHQ 255
+S +K D + T Y P PQ T+ T +Q H N LQL+ Q
Sbjct: 594 YSDLKVDISGGYVPYGDYSTHYSPP--PQYLTTCSTKSNGSSTIMQN--NHQNQLQLQQQ 649
Query: 256 RQ*SPIQHHLHLIQLSTNTLILLITQHSNEQFMAGSLVSKLGTEEEF---SLSSTFFGGF 426
+Q S QHH T TL + +S+ + GS++ ++ SL ST
Sbjct: 650 QQQSHHQHH-----TQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGLPSLQSTTASVV 704
Query: 427 SSGAN-SCGIDSFSKDLIHTNMELPMLTQDIAFPTSY--VYSSPEKHQLKSKTFP 582
SS N SC S + T + + ++ Y +Y +P S P
Sbjct: 705 SSSPNGSCSNQSTTAATTTTTHVVVPSSMALSVDPRYSAIYGNPYLRSSNSSLLP 759
>sp|Q08180|ICCR_DROME Irregular chiasm C-roughest protein precursor (IRREC protein)
gi|627162|pir||A49448 irregular chiasm C-roughest
precursor - fruit fly (Drosophila melanogaster)
gi|304791|gb|AAA16632.1| irreC roughest protein
gi|312986|emb|CAA79756.1| irreC-roughest protein
[Drosophila melanogaster] gi|739456|prf||2003280A irreC
roughest protein
Length = 764
Score = 32.7 bits (73), Expect = 4.9
Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Frame = +1
Query: 94 FSSIKTDDINTQIQSSFQKT*YDKPGSPQ------TQRTHKKTYIQR*VIHYNNLQLKHQ 255
+S +K D + T Y P PQ T+ T +Q H N LQL+ Q
Sbjct: 594 YSDLKVDISGGYVPYGDYSTHYSPP--PQYLTTCSTKSNGSSTIMQN--NHQNQLQLQQQ 649
Query: 256 RQ*SPIQHHLHLIQLSTNTLILLITQHSNEQFMAGSLVSKLGTEEEF---SLSSTFFGGF 426
+Q S QHH T TL + +S+ + GS++ ++ SL ST
Sbjct: 650 QQQSHHQHH-----TQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGLPSLQSTTASVV 704
Query: 427 SSGAN-SCGIDSFSKDLIHTNMELPMLTQDIAFPTSY--VYSSPEKHQLKSKTFP 582
SS N SC S + T + + ++ Y +Y +P S P
Sbjct: 705 SSSPNGSCSNQSTTAATTTTTHVVVPSSMALSVDPRYSAIYGNPYLRSSNSSLLP 759
>ref|NP_702483.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497668|gb|AAN37207.1|AE014826_6 hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3322
Score = 32.3 bits (72), Expect = 6.4
Identities = 20/48 (41%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = +2
Query: 212 KDRSYITIICS*N--TRDNNHQFNIIFTLFNYLLTH*YYSSLNILMSS 349
K R YI IC N T +NN+ ++I T +NYL T+ +S IL +S
Sbjct: 3108 KSRFYIKRICLKNNKTMENNNIYDICSTYYNYLYTYDPNNSTYILQTS 3155
>ref|XP_217651.1| similar to LD34222p [Drosophila melanogaster] [Rattus norvegicus]
Length = 1147
Score = 32.0 bits (71), Expect = 8.4
Identities = 29/107 (27%), Positives = 47/107 (43%)
Frame = +1
Query: 283 LHLIQLSTNTLILLITQHSNEQFMAGSLVSKLGTEEEFSLSSTFFGGFSSGANSCGIDSF 462
L LI+ + + +++ + + L LG EE LSS+ G+ A +DS
Sbjct: 425 LKLIKQAGDRVLVYYQRPVGQSNQGAMLQDSLGQLEENFLSSSCQPGYEEEAAGLPVDSE 484
Query: 463 SKDLIHTNMELPMLTQDIAFPTSYVYSSPEKHQLKSKTFPLKNSAKR 603
++DL + E L D+ T +LK +T PL +S KR
Sbjct: 485 TRDL---DSEFEDLAGDVRVQT----------ELKEETQPLSHSPKR 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,366,430
Number of Sequences: 1393205
Number of extensions: 12016925
Number of successful extensions: 33848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33828
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
