Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011620A_C01 KMC011620A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_049597.1| orf1386 [Tetrahymena pyriformis] gi|5306158|gb|... 40 0.016
gb|AAM62885.1| unknown [Arabidopsis thaliana] 39 0.047
ref|NP_190988.1| putative protein; protein id: At3g54200.1, supp... 38 0.061
ref|NP_700669.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.30
ref|XP_159923.1| hypothetical protein XP_159923 [Mus musculus] g... 36 0.30
>ref|NP_049597.1| orf1386 [Tetrahymena pyriformis]
gi|5306158|gb|AAD41942.1|AF160864_30 orf1386
[Tetrahymena pyriformis]
Length = 1386
Score = 40.0 bits (92), Expect = 0.016
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -2
Query: 262 YMFLFKYIVYIYIF*TVSNIYIYIYIYIFEQFQYIVASIT*ISRHLLKKNK*IN 101
Y+ L++YI I ++ + NIYIYI+I I+ + YI I + +K+NK N
Sbjct: 294 YILLYRYIYNINVYIFIYNIYIYIFIIIYNYYIYIYNIIINTLKIKIKENKQFN 347
>gb|AAM62885.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 38.5 bits (88), Expect = 0.047
Identities = 21/62 (33%), Positives = 33/62 (52%)
Frame = -2
Query: 499 IMTRHMISEPNSWSDVEAGSLNLTPKATLPGKVQLLKVLKLKATIYVSCALCFNISSISA 320
+M ++SE SDV AG + L + GKV +LK+ K+K SC L ++S+ +
Sbjct: 165 LMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSNRNV 224
Query: 319 DS 314
S
Sbjct: 225 TS 226
>ref|NP_190988.1| putative protein; protein id: At3g54200.1, supported by cDNA: 1678.
[Arabidopsis thaliana] gi|11357593|pir||T47579
hypothetical protein F24B22.160 - Arabidopsis thaliana
gi|6822066|emb|CAB70994.1| putative protein [Arabidopsis
thaliana]
Length = 235
Score = 38.1 bits (87), Expect = 0.061
Identities = 21/62 (33%), Positives = 32/62 (50%)
Frame = -2
Query: 499 IMTRHMISEPNSWSDVEAGSLNLTPKATLPGKVQLLKVLKLKATIYVSCALCFNISSISA 320
+M ++SE SDV AG + L + GKV +LK+ K+K SC L ++S +
Sbjct: 165 LMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNV 224
Query: 319 DS 314
S
Sbjct: 225 TS 226
>ref|NP_700669.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495061|gb|AAN35393.1|AE014832_15 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1005
Score = 35.8 bits (81), Expect = 0.30
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -2
Query: 250 FKYIVYIYI-F*TVSNIYIYIYIYIFEQFQYI 158
F+ +YIYI F +S IYIYIYIYI+ F ++
Sbjct: 30 FRLYIYIYIYFFILSIIYIYIYIYIYIYFHFV 61
Score = 32.0 bits (71), Expect = 4.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 139 FKLWRQLYIGT-VQKYIYIYIYIYWRLFKKYIYILYI 246
F+L+ +YI + IYIYIYIY ++ ++Y +YI
Sbjct: 30 FRLYIYIYIYFFILSIIYIYIYIYIYIYFHFVYYIYI 66
Score = 30.8 bits (68), Expect = 9.8
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1
Query: 263 VHVLVQIYSIYIYFLNSLQYIYIYIYIYF 177
+++ + IY IYIYF + + YIYIYI+ +F
Sbjct: 46 IYIYIYIY-IYIYF-HFVYYIYIYIFFFF 72
>ref|XP_159923.1| hypothetical protein XP_159923 [Mus musculus]
gi|28490145|ref|XP_289151.1| hypothetical protein
XP_289151 [Mus musculus]
Length = 415
Score = 35.8 bits (81), Expect = 0.30
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 262 YMFLFKYI-VYIYIF*TVSNIYIYIYIYIFEQFQYI 158
Y++++ YI +YIYI+ IYIYIYIYI +YI
Sbjct: 376 YIYIYIYIYIYIYIY-----IYIYIYIYILIDMKYI 406
Score = 32.3 bits (72), Expect = 3.4
Identities = 24/70 (34%), Positives = 33/70 (46%), Gaps = 11/70 (15%)
Frame = +1
Query: 64 RKANNMPSPTPS-----------YLFIYFS*ASAY*FKLWRQLYIGTVQKYIYIYIYIYW 210
R N +P+P PS Y++IY ++ +YI + YIYIYIYIY
Sbjct: 351 RYENPLPTPKPSTVDPKLRISHNYIYIY----------IYIYIYI-YIYIYIYIYIYIYI 399
Query: 211 RLFKKYIYIL 240
+ KYI L
Sbjct: 400 LIDMKYICTL 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,616,476
Number of Sequences: 1393205
Number of extensions: 10923978
Number of successful extensions: 40547
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 30835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37108
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
