Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011590A_C01 KMC011590A_c01
(300 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S53521 histone H2A.4 - wheat gi|536892|dbj|BAA07278.1| prot... 52 2e-06
ref|NP_175517.1| histone H2A, putative; protein id: At1g51060.1,... 45 3e-04
gb|AAM67032.1| histone H2A-like protein [Arabidopsis thaliana] 45 3e-04
ref|NP_194453.1| histone H2A- like protein; protein id: At4g2723... 45 3e-04
ref|NP_200275.1| histone H2A (gb|AAF64418.1); protein id: At5g54... 45 3e-04
>pir||S53521 histone H2A.4 - wheat gi|536892|dbj|BAA07278.1| protein H2A
[Triticum aestivum] gi|536896|dbj|BAA07280.1| protein
H2A [Triticum aestivum]
Length = 134
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -2
Query: 299 ANGGVMPNIHNLXLPKKAGGSKGAAAAADDDA 204
A+GGVMPNIHNL LPKKAGGSK A AADDD+
Sbjct: 105 ASGGVMPNIHNLLLPKKAGGSK--AVAADDDS 134
>ref|NP_175517.1| histone H2A, putative; protein id: At1g51060.1, supported by cDNA:
gi_13877850, supported by cDNA: gi_17065593 [Arabidopsis
thaliana] gi|25294262|pir||G96547 probable histone H2A
[imported] - Arabidopsis thaliana
gi|12320785|gb|AAG50540.1|AC079828_11 histone H2A,
putative [Arabidopsis thaliana]
gi|13877851|gb|AAK44003.1|AF370188_1 putative histone
H2A protein [Arabidopsis thaliana]
gi|17065594|gb|AAL33777.1| putative histone H2A protein
[Arabidopsis thaliana]
Length = 132
Score = 45.1 bits (105), Expect = 3e-04
Identities = 22/31 (70%), Positives = 24/31 (76%)
Frame = -2
Query: 299 ANGGVMPNIHNLXLPKKAGGSKGAAAAADDD 207
ANGGVMPNIHNL LPKK G SK +A+DD
Sbjct: 105 ANGGVMPNIHNLLLPKKTGASK---PSAEDD 132
>gb|AAM67032.1| histone H2A-like protein [Arabidopsis thaliana]
Length = 131
Score = 45.1 bits (105), Expect = 3e-04
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -2
Query: 299 ANGGVMPNIHNLXLPKKAGGSK 234
ANGGVMPNIHNL LPKKAG SK
Sbjct: 105 ANGGVMPNIHNLLLPKKAGSSK 126
>ref|NP_194453.1| histone H2A- like protein; protein id: At4g27230.1, supported by
cDNA: 927. [Arabidopsis thaliana] gi|7439708|pir||T05747
histone H2A.M4I22.40 - Arabidopsis thaliana
gi|3269284|emb|CAA19717.1| histone H2A-like protein
[Arabidopsis thaliana] gi|7269576|emb|CAB79578.1|
histone H2A-like protein [Arabidopsis thaliana]
gi|28973733|gb|AAO64183.1| putative histone H2A
[Arabidopsis thaliana]
Length = 131
Score = 45.1 bits (105), Expect = 3e-04
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -2
Query: 299 ANGGVMPNIHNLXLPKKAGGSK 234
ANGGVMPNIHNL LPKKAG SK
Sbjct: 105 ANGGVMPNIHNLLLPKKAGSSK 126
>ref|NP_200275.1| histone H2A (gb|AAF64418.1); protein id: At5g54640.1, supported by
cDNA: 4875. [Arabidopsis thaliana]
gi|7595337|gb|AAF64418.1|AF204967_1 histone H2A
[Arabidopsis thaliana]
gi|7595339|gb|AAF64419.1|AF204968_1 histone H2A
[Arabidopsis thaliana] gi|9758956|dbj|BAB09343.1|
histone H2A [Arabidopsis thaliana]
gi|21593834|gb|AAM65801.1| histone H2A [Arabidopsis
thaliana] gi|28393261|gb|AAO42059.1| putative histone
H2A protein [Arabidopsis thaliana]
gi|28827756|gb|AAO50722.1| putative histone H2A protein
[Arabidopsis thaliana]
Length = 130
Score = 45.1 bits (105), Expect = 3e-04
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -2
Query: 299 ANGGVMPNIHNLXLPKKAGGSK 234
ANGGVMPNIHNL LPKKAG SK
Sbjct: 105 ANGGVMPNIHNLLLPKKAGASK 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,876,549
Number of Sequences: 1393205
Number of extensions: 3984629
Number of successful extensions: 10171
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 9275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10032
length of database: 448,689,247
effective HSP length: 75
effective length of database: 344,198,872
effective search space used: 8260772928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
