Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011549A_C01 KMC011549A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55659.1| OJ1092_A07.13 [Oryza sativa (japonica cultivar-g... 76 2e-13
ref|NP_193724.1| putative protein; protein id: At4g19900.1 [Arab... 74 8e-13
sp|Q28262|PAFA_CANFA Platelet-activating factor acetylhydrolase ... 33 2.6
ref|NP_187514.1| unknown protein; protein id: At3g09020.1 [Arabi... 32 3.4
ref|NP_176300.1| hypothetical protein; protein id: At1g61050.1 [... 31 7.6
>dbj|BAC55659.1| OJ1092_A07.13 [Oryza sativa (japonica cultivar-group)]
Length = 615
Score = 76.3 bits (186), Expect = 2e-13
Identities = 32/63 (50%), Positives = 46/63 (72%)
Frame = -3
Query: 520 TRYFIAPATETEKAQEDVLLKKIMQESLTFHFWNSLTSALIPEPDSLVTRLMNYACIRCL 341
TRYF + E+AQ D L +I+ +S TFH WNS+TS+L+PEP+SLV R++N C+ CL
Sbjct: 553 TRYFSEADSTDERAQHDALFSRIVNDSTTFHLWNSITSSLVPEPNSLVERILNRYCLHCL 612
Query: 340 ELL 332
++L
Sbjct: 613 DVL 615
>ref|NP_193724.1| putative protein; protein id: At4g19900.1 [Arabidopsis thaliana]
gi|25407572|pir||F85225 hypothetical protein AT4g19900
[imported] - Arabidopsis thaliana
gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis
thaliana] gi|7268785|emb|CAB78991.1| putative protein
[Arabidopsis thaliana]
Length = 1302
Score = 74.3 bits (181), Expect = 8e-13
Identities = 33/53 (62%), Positives = 43/53 (80%)
Frame = -3
Query: 520 TRYFIAPATETEKAQEDVLLKKIMQESLTFHFWNSLTSALIPEPDSLVTRLMN 362
T YF PA E E++Q+D KKI+ ESLTFHFWNS+TS+LIPEP+SLV +L++
Sbjct: 582 TNYFAYPAIEDERSQQDESFKKILNESLTFHFWNSVTSSLIPEPESLVAKLIS 634
>sp|Q28262|PAFA_CANFA Platelet-activating factor acetylhydrolase precursor (PAF
acetylhydrolase) (PAF 2-acylhydrolase) (LDL-associated
phospholipase A2) (LDL-PLA(2))
(2-acetyl-1-alkylglycerophosphocholine esterase)
(1-alkyl-2-acetylglycerophosphocholine esterase)
gi|1054901|gb|AAC48484.1| plasma PAF acetylhydrolase
gi|1585652|prf||2201424A platelet-activating factor
acetylhydrolase
Length = 444
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/37 (43%), Positives = 20/37 (53%)
Frame = +1
Query: 244 CY*PKLEHKHS*FVILNGSSRQNWGKFTFTTTPSIGY 354
CY P E K + + GS QN+ FTFTT +GY
Sbjct: 335 CYSPDKERK---MITIRGSVHQNFADFTFTTGKIVGY 368
>ref|NP_187514.1| unknown protein; protein id: At3g09020.1 [Arabidopsis thaliana]
gi|5923667|gb|AAD56318.1|AC009326_5 hypothetical protein
[Arabidopsis thaliana]
gi|6403486|gb|AAF07826.1|AC010871_2 unknown protein
[Arabidopsis thaliana]
Length = 411
Score = 32.3 bits (72), Expect = 3.4
Identities = 15/58 (25%), Positives = 27/58 (45%)
Frame = -3
Query: 517 RYFIAPATETEKAQEDVLLKKIMQESLTFHFWNSLTSALIPEPDSLVTRLMNYACIRC 344
+ F P TE + + V + ++ + S H WN + E S + +L++ CI C
Sbjct: 347 KLFKVPRTEKDSKRVQVKVLEMQKRSYGLHLWNKFSRKFEIEQGSAMDKLVSNQCIIC 404
>ref|NP_176300.1| hypothetical protein; protein id: At1g61050.1 [Arabidopsis
thaliana] gi|25404304|pir||B96636 hypothetical protein
T7P1.18 [imported] - Arabidopsis thaliana
gi|12323337|gb|AAG51645.1|AC018908_11 hypothetical
protein; 81821-83128 [Arabidopsis thaliana]
Length = 435
Score = 31.2 bits (69), Expect = 7.6
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -3
Query: 514 YFIAPATETEKAQEDVLLKKIMQESLTFHFWNSLTSALIPEPDSLVTRLMNYACIRC 344
++ AP E++ A L + + + H WN + L E S++ +LM+++CI C
Sbjct: 372 FYRAPTNESD-AWLRKRLTHLRKNTFAVHLWNRESKKLRIEEGSIIHQLMSHSCIFC 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,464,193
Number of Sequences: 1393205
Number of extensions: 7222291
Number of successful extensions: 15994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15977
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
