Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011468A_C01 KMC011468A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192982.1| putative protein; protein id: At4g12450.1 [Arab... 116 1e-25
ref|NP_176441.1| hypothetical protein; protein id: At1g62520.1 [... 110 1e-23
ref|NP_193987.1| putative protein; protein id: At4g22560.1 [Arab... 103 2e-21
emb|CAB53477.1| CAA30374.1 protein [Oryza sativa] 64 2e-09
ref|NP_567769.1| expressed protein; protein id: At4g27240.1, sup... 63 3e-09
>ref|NP_192982.1| putative protein; protein id: At4g12450.1 [Arabidopsis thaliana]
gi|7487232|pir||T07637 hypothetical protein T1P17.40 -
Arabidopsis thaliana gi|4725944|emb|CAB41715.1| putative
protein [Arabidopsis thaliana]
gi|7267947|emb|CAB78288.1| putative protein [Arabidopsis
thaliana]
Length = 277
Score = 116 bits (291), Expect = 1e-25
Identities = 64/108 (59%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Frame = -3
Query: 536 EVMRFHFLGAY-GGLDGGCSWSFPERNGSAICTFAVCGDAHESTGGGRGRRAMLVCRVIA 360
E+MRF LG GG++GG +W FP G+A+CTF+ G+AH STGGG GRRAML+CRVIA
Sbjct: 180 EMMRFFPLGPIPGGINGG-AWGFPGGKGAAVCTFSGSGEAHASTGGGGGRRAMLICRVIA 238
Query: 359 GRVSKPIGFLDSLLDKRVGFDSVSGDHGELFVFDPRAVLPCFLIVYRL 216
GRV+K F G DSV+G GEL VFD RAVLPCFLI +RL
Sbjct: 239 GRVAKKGEF---------GSDSVAGRAGELIVFDARAVLPCFLIFFRL 277
>ref|NP_176441.1| hypothetical protein; protein id: At1g62520.1 [Arabidopsis
thaliana] gi|5454194|gb|AAD43609.1|AC005698_8 T3P18.8
[Arabidopsis thaliana] gi|28393500|gb|AAO42171.1|
unknown protein [Arabidopsis thaliana]
gi|28973499|gb|AAO64074.1| unknown protein [Arabidopsis
thaliana]
Length = 280
Score = 110 bits (275), Expect = 1e-23
Identities = 65/110 (59%), Positives = 76/110 (69%), Gaps = 3/110 (2%)
Frame = -3
Query: 536 EVMRFHFLG-AYGGLDGGCSWSF--PERNGSAICTFAVCGDAHESTGGGRGRRAMLVCRV 366
E MRF+ LG +YGG GG +W + G++I TFA A+E GGG+GR+AMLVCRV
Sbjct: 174 ETMRFYCLGPSYGG--GGSAWGILGGKGGGASIYTFAGSSTANEKAGGGKGRKAMLVCRV 231
Query: 365 IAGRVSKPIGFLDSLLDKRVGFDSVSGDHGELFVFDPRAVLPCFLIVYRL 216
IAGRV+K L D R FDSVSGD GEL VFD RAVLPCFLI+YRL
Sbjct: 232 IAGRVTKQ-NELKYDSDLRSRFDSVSGDDGELLVFDTRAVLPCFLIIYRL 280
>ref|NP_193987.1| putative protein; protein id: At4g22560.1 [Arabidopsis thaliana]
gi|7486606|pir||T05450 hypothetical protein F7K2.140 -
Arabidopsis thaliana gi|3892711|emb|CAA22161.1| putative
protein [Arabidopsis thaliana]
gi|7269102|emb|CAB79211.1| putative protein [Arabidopsis
thaliana]
Length = 264
Score = 103 bits (256), Expect = 2e-21
Identities = 57/107 (53%), Positives = 71/107 (66%)
Frame = -3
Query: 536 EVMRFHFLGAYGGLDGGCSWSFPERNGSAICTFAVCGDAHESTGGGRGRRAMLVCRVIAG 357
E+MRF+ G +GG F G A+CTF+ G+A+ S+GGG GR+AM++CRVIAG
Sbjct: 170 EMMRFY--PVLDGFNGGAC-VFAGGKGQAVCTFSGSGEAYVSSGGGGGRKAMMICRVIAG 226
Query: 356 RVSKPIGFLDSLLDKRVGFDSVSGDHGELFVFDPRAVLPCFLIVYRL 216
RV IGF G DSV+G GELFVFD RAVLPCFLI++RL
Sbjct: 227 RVDDVIGF---------GSDSVAGRDGELFVFDTRAVLPCFLIIFRL 264
>emb|CAB53477.1| CAA30374.1 protein [Oryza sativa]
Length = 603
Score = 63.5 bits (153), Expect = 2e-09
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Frame = -3
Query: 470 PERNGSAICTFAVCGDAHE---STGGGRGRRAMLVCRVIAGRVSK---PIGFLDSLLDKR 309
P G+ I T A G AH+ S+G RRAMLVCRVIAGRV + + ++
Sbjct: 506 PPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRREEAAAAAAEEEEEEE 565
Query: 308 VGFDSVSG-------DHGELFVFDPRAVLPCFLIVYR 219
+DSV+G + EL VF+P A+LPCF++VYR
Sbjct: 566 EEYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVYR 602
>ref|NP_567769.1| expressed protein; protein id: At4g27240.1, supported by cDNA:
2944. [Arabidopsis thaliana] gi|7486806|pir||T05748
hypothetical protein M4I22.50 - Arabidopsis thaliana
gi|3269285|emb|CAA19718.1| hypothetical protein
[Arabidopsis thaliana] gi|7269577|emb|CAB79579.1|
hypothetical protein [Arabidopsis thaliana]
Length = 431
Score = 62.8 bits (151), Expect = 3e-09
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 10/89 (11%)
Frame = -3
Query: 461 NGSAICTFAVCGDAHEST----GGGRGRRAMLVCRVIAGRVSKPIGFLDSLLDKRVGFDS 294
NG + T + A ES GGG R+A++VCRVIAGRV +P+ ++ + GFDS
Sbjct: 340 NGIGVFTASTSERAFESIVIGDGGGGDRKALIVCRVIAGRVHRPVENVEEMGGLLSGFDS 399
Query: 293 VSGDHG------ELFVFDPRAVLPCFLIV 225
++G G EL++ + RA+LPCF+++
Sbjct: 400 LAGKVGLYTNVEELYLLNSRALLPCFVLI 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,985,912
Number of Sequences: 1393205
Number of extensions: 11481150
Number of successful extensions: 58336
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 51164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57695
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
