Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011467A_C01 KMC011467A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196816.1| peptidyl-prolyl isomerase protein; protein id: ... 204 1e-51
gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsi... 204 1e-51
emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidops... 202 3e-51
gb|AAG03106.1|AC073405_22 similar to Arabidopsis thaliana Peptid... 200 2e-50
gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana] 159 4e-38
>ref|NP_196816.1| peptidyl-prolyl isomerase protein; protein id: At5g13120.1,
supported by cDNA: 620., supported by cDNA: gi_13605816,
supported by cDNA: gi_16323327 [Arabidopsis thaliana]
gi|13605817|gb|AAK32894.1|AF367307_1 AT5g13120/T19L5_80
[Arabidopsis thaliana] gi|16323328|gb|AAL15377.1|
AT5g13120/T19L5_80 [Arabidopsis thaliana]
Length = 259
Score = 204 bits (519), Expect = 1e-51
Identities = 95/113 (84%), Positives = 102/113 (90%)
Frame = +2
Query: 365 FSSESEEAAGAGLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTG 544
FS +S QSK+THKVYFDIS+GNPVGKLAGRIVIGL+GDDVPQT ENFRALCTG
Sbjct: 72 FSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTG 131
Query: 545 EKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGP 703
EKGFGYKGSTFHRVI+DFMIQGGDF+KGNGTGGKS+YGRTFKDENFKLSH GP
Sbjct: 132 EKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGP 184
>gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
Length = 259
Score = 204 bits (519), Expect = 1e-51
Identities = 95/113 (84%), Positives = 102/113 (90%)
Frame = +2
Query: 365 FSSESEEAAGAGLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTG 544
FS +S QSK+THKVYFDIS+GNPVGKLAGRIVIGL+GDDVPQT ENFRALCTG
Sbjct: 72 FSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTG 131
Query: 545 EKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGP 703
EKGFGYKGSTFHRVI+DFMIQGGDF+KGNGTGGKS+YGRTFKDENFKLSH GP
Sbjct: 132 EKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGP 184
>emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
Length = 259
Score = 202 bits (515), Expect = 3e-51
Identities = 92/100 (92%), Positives = 98/100 (98%)
Frame = +2
Query: 404 QSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHR 583
QSK+THKVYFDIS+GNPVGKLAGRIVIGL+GDDVPQT ENFRALCTGEKGFGYKGSTFHR
Sbjct: 85 QSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHR 144
Query: 584 VIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGP 703
VI+DFMIQGGDF+KGNGTGGKS+YGRTFKDENFKLSH GP
Sbjct: 145 VIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGP 184
>gb|AAG03106.1|AC073405_22 similar to Arabidopsis thaliana Peptidyl-prolyl cis-trans isomerase
(P34791) [Oryza sativa]
Length = 173
Score = 200 bits (508), Expect = 2e-50
Identities = 93/101 (92%), Positives = 98/101 (96%)
Frame = +2
Query: 401 LQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFH 580
LQSK+T+KVYFDISIGNPVGK GR+VIGL+GDDVPQTAENFRALCTGEKGFGYKGS+FH
Sbjct: 28 LQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFH 87
Query: 581 RVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGP 703
RVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKL HTGP
Sbjct: 88 RVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGP 128
>gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]
Length = 260
Score = 159 bits (402), Expect = 4e-38
Identities = 77/112 (68%), Positives = 91/112 (80%)
Frame = +2
Query: 368 SSESEEAAGAGLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGE 547
S +EE Q+KVT+KVYFD+ IG G++AGRIV+GLFG+ VP+T ENFRALCTGE
Sbjct: 78 SMAAEEEEVTEPQAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGE 134
Query: 548 KGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGP 703
K +GYKGS+FHR+IKDFMIQGGDF +GNGTGG SIYG F+DENF L HTGP
Sbjct: 135 KKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGP 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 678,428,538
Number of Sequences: 1393205
Number of extensions: 16565559
Number of successful extensions: 55910
Number of sequences better than 10.0: 768
Number of HSP's better than 10.0 without gapping: 51054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55203
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
