Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011466A_C01 KMC011466A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA27333.1| predicted protein [Neurospora crassa] 35 0.66
sp|P21521|SY65_DROME SYNAPTOTAGMIN (P65) gi|71843|pir||BMFFSY sy... 34 0.87
ref|NP_523460.2| synaptotagmin CG3139-PA gi|7295906|gb|AAF51205.... 34 0.87
gb|ZP_00105184.1| hypothetical protein [Prochlorococcus marinus ... 33 1.5
gb|EAA28582.1| predicted protein [Neurospora crassa] 32 3.3
>gb|EAA27333.1| predicted protein [Neurospora crassa]
Length = 207
Score = 34.7 bits (78), Expect = 0.66
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -1
Query: 420 TSTKTKS*LTKSYLCSMHKA*RYV*TTLLHTPHVSLLQPPTPTQTH----LNCNLRITES 253
T+T S + + ++H A R + T + + L PTPT TH L C L T S
Sbjct: 43 TNTTNGSNTSSNPASTLHAAARKIPATEIPSSIFQSLINPTPTTTHQQPILPCTLSATSS 102
Query: 252 IVETMKSEFGNDL 214
+ S+FGN+L
Sbjct: 103 NIRRRISQFGNNL 115
>sp|P21521|SY65_DROME SYNAPTOTAGMIN (P65) gi|71843|pir||BMFFSY synaptotagmin - fruit fly
(Drosophila melanogaster) gi|158527|gb|AAA28925.1|
synaptotagmin p65
Length = 474
Score = 34.3 bits (77), Expect = 0.87
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 212 TKDDR*EKSLDEK---IVSGIFPEKIRPCFEERVDRGARKMDERERKESKRGILKLKLE 45
TKD + +K +D K ++ + EK++P EE + +E ++ E K G L KLE
Sbjct: 143 TKDGKGKKGVDMKSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKLE 201
>ref|NP_523460.2| synaptotagmin CG3139-PA gi|7295906|gb|AAF51205.1| CG3139-PA
[Drosophila melanogaster]
Length = 474
Score = 34.3 bits (77), Expect = 0.87
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 212 TKDDR*EKSLDEK---IVSGIFPEKIRPCFEERVDRGARKMDERERKESKRGILKLKLE 45
TKD + +K +D K ++ + EK++P EE + +E ++ E K G L KLE
Sbjct: 143 TKDGKGKKGVDMKSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKLE 201
>gb|ZP_00105184.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 366
Score = 33.5 bits (75), Expect = 1.5
Identities = 22/71 (30%), Positives = 38/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 10 FLIQPKSIRVRDSNFNFK--IPLFDSFLSLSSIFLAPRSTLSSKHGLIFSGKIPLTIFSS 183
FL + + ++++S N + I DSF S S+IF P + L+ + ++ L I +S
Sbjct: 237 FLEKEYNEQIKNSTLNLRGNIKNIDSFFSESAIFCFPSLWEGYPNSLVEALRMGLPIVTS 296
Query: 184 KLFSYLSSFVQ 216
K YL+ FV+
Sbjct: 297 KRMKYLTEFVE 307
>gb|EAA28582.1| predicted protein [Neurospora crassa]
Length = 505
Score = 32.3 bits (72), Expect = 3.3
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +2
Query: 35 GLGIPISISKFLSSILSSLSHPSSSLLDQPFLQSMVLFSQGKFRLQFSRPSSFPIYHPSS 214
G GI S LSS +SS HPSSS + + + Q+ LF RL + + P+ PSS
Sbjct: 17 GSGIMSSSLSSLSSSVSSARHPSSSNISKAYRQASTLFLTR--RLPEALSTVLPLITPSS 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,121,894
Number of Sequences: 1393205
Number of extensions: 9649893
Number of successful extensions: 34778
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34705
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
