Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011423A_C01 KMC011423A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195517.1| Exostosin family; protein id: At4g38040.1, supp... 232 2e-60
dbj|BAB16922.1| P0005A05.26 [Oryza sativa (japonica cultivar-gro... 124 7e-28
dbj|BAB92790.1| limonene cyclase-like protein [Oryza sativa (jap... 120 8e-27
ref|NP_196674.1| Exostosin family; protein id: At5g11130.1 [Arab... 117 7e-26
dbj|BAB08605.1| contains similarity to limonene cyclase~gene_id:... 117 7e-26
>ref|NP_195517.1| Exostosin family; protein id: At4g38040.1, supported by cDNA:
gi_15293110, supported by cDNA: gi_21280960 [Arabidopsis
thaliana] gi|7485846|pir||T05631 hypothetical protein
F20D10.160 - Arabidopsis thaliana
gi|4467110|emb|CAB37544.1| putative protein [Arabidopsis
thaliana] gi|7270787|emb|CAB80469.1| putative protein
[Arabidopsis thaliana] gi|15293111|gb|AAK93666.1|
unknown protein [Arabidopsis thaliana]
gi|21280961|gb|AAM45007.1| unknown protein [Arabidopsis
thaliana]
Length = 425
Score = 232 bits (591), Expect = 2e-60
Identities = 103/119 (86%), Positives = 112/119 (93%)
Frame = -1
Query: 533 QKRFYRSKFCICPGGSQVNSARIADSIHYGCIPVILSDYYDLPFNDIINWRKFAVVLKES 354
QKRFYR+KFCICPGGSQVNSARI DSIHYGCIPVILSDYYDLPFNDI+NWRKFAVVL+E
Sbjct: 307 QKRFYRTKFCICPGGSQVNSARITDSIHYGCIPVILSDYYDLPFNDILNWRKFAVVLREQ 366
Query: 353 DVYQLKQILKNISQAEFVTLHNNLVKVQKHFQWNSPPVGYDAFHMVMYDLWLRHHAIKY 177
DVY LKQILKNI +EFV+LHNNLVKVQKHFQWNSPPV +DAFHM+MY+LWLRHH +KY
Sbjct: 367 DVYNLKQILKNIPHSEFVSLHNNLVKVQKHFQWNSPPVKFDAFHMIMYELWLRHHVVKY 425
>dbj|BAB16922.1| P0005A05.26 [Oryza sativa (japonica cultivar-group)]
gi|17385660|dbj|BAB78613.1| P0482C06.9 [Oryza sativa
(japonica cultivar-group)]
Length = 438
Score = 124 bits (311), Expect = 7e-28
Identities = 51/105 (48%), Positives = 78/105 (73%)
Frame = -1
Query: 515 SKFCICPGGSQVNSARIADSIHYGCIPVILSDYYDLPFNDIINWRKFAVVLKESDVYQLK 336
SK+CICP G +VNS RI ++I+Y C+PVI++D + LPF+D +NW F+VV+ E DV +LK
Sbjct: 324 SKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPFDDALNWSAFSVVIPEKDVPKLK 383
Query: 335 QILKNISQAEFVTLHNNLVKVQKHFQWNSPPVGYDAFHMVMYDLW 201
QIL I +++ + +N+ +VQKHF W+ P+ YD FHM+++ +W
Sbjct: 384 QILLAIPDDQYMAMQSNVQRVQKHFIWHPNPIKYDIFHMILHSIW 428
>dbj|BAB92790.1| limonene cyclase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 499
Score = 120 bits (302), Expect = 8e-27
Identities = 47/106 (44%), Positives = 80/106 (75%)
Frame = -1
Query: 515 SKFCICPGGSQVNSARIADSIHYGCIPVILSDYYDLPFNDIINWRKFAVVLKESDVYQLK 336
S+FC+CP G +VNS RI ++++Y C+PVI++D + LP +D+++W FAVV+ E DV LK
Sbjct: 384 SRFCLCPMGYEVNSPRIVEALYYECVPVIIADNFVLPLSDVLDWSAFAVVVAEKDVPDLK 443
Query: 335 QILKNISQAEFVTLHNNLVKVQKHFQWNSPPVGYDAFHMVMYDLWL 198
+IL+ I+ ++V +H + ++Q+HF W++ P+ YD FHM+++ +WL
Sbjct: 444 KILQGITLRKYVAMHGCVKRLQRHFLWHARPLRYDLFHMILHSIWL 489
>ref|NP_196674.1| Exostosin family; protein id: At5g11130.1 [Arabidopsis thaliana]
gi|8953375|emb|CAB96648.1| putative protein [Arabidopsis
thaliana]
Length = 336
Score = 117 bits (294), Expect = 7e-26
Identities = 48/112 (42%), Positives = 80/112 (70%)
Frame = -1
Query: 530 KRFYRSKFCICPGGSQVNSARIADSIHYGCIPVILSDYYDLPFNDIINWRKFAVVLKESD 351
K ++KFC+CP G +V S RI +S++ GC+PVI++DYY LPF+D++NW+ F+V + S
Sbjct: 215 KMMDKAKFCLCPSGWEVASPRIVESLYSGCVPVIIADYYVLPFSDVLNWKTFSVHIPISK 274
Query: 350 VYQLKQILKNISQAEFVTLHNNLVKVQKHFQWNSPPVGYDAFHMVMYDLWLR 195
+ +K+IL+ I++ E++ + +++V+KHF N P YD HM+M+ +WLR
Sbjct: 275 MPDIKKILEAITEEEYLNMQRRVLEVRKHFVINRPSKPYDMLHMIMHSIWLR 326
>dbj|BAB08605.1| contains similarity to limonene cyclase~gene_id:MED24.9
[Arabidopsis thaliana]
Length = 408
Score = 117 bits (294), Expect = 7e-26
Identities = 46/112 (41%), Positives = 80/112 (71%)
Frame = -1
Query: 515 SKFCICPGGSQVNSARIADSIHYGCIPVILSDYYDLPFNDIINWRKFAVVLKESDVYQLK 336
SKFCICP G +V S RI ++++ GC+PV+++ Y PF+D++NWR F+V++ D+ LK
Sbjct: 293 SKFCICPSGYEVASPRIVEALYSGCVPVLINSGYVPPFSDVLNWRSFSVIVSVEDIPNLK 352
Query: 335 QILKNISQAEFVTLHNNLVKVQKHFQWNSPPVGYDAFHMVMYDLWLRHHAIK 180
IL +IS +++ ++ ++KV++HF+ NSP +D FHM+++ +W+R +K
Sbjct: 353 TILTSISPRQYLRMYRRVLKVRRHFEVNSPAKRFDVFHMILHSIWVRRLNVK 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,520,520
Number of Sequences: 1393205
Number of extensions: 8881958
Number of successful extensions: 19621
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 18846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19586
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
