Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011394A_C01 KMC011394A_c01
(967 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK56268.1|AF367279_1 AT4g17486/AT4g17486 [Arabidopsis thalia... 262 5e-69
ref|NP_199542.1| putative protein; protein id: At5g47310.1 [Arab... 261 1e-68
pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|e... 249 3e-65
gb|AAM65611.1| unknown [Arabidopsis thaliana] 211 1e-53
ref|NP_564513.1| expressed protein; protein id: At1g47740.1, sup... 211 1e-53
>gb|AAK56268.1|AF367279_1 AT4g17486/AT4g17486 [Arabidopsis thaliana]
gi|15777887|gb|AAL05904.1| AT4g17486/AT4g17486
[Arabidopsis thaliana]
Length = 224
Score = 262 bits (670), Expect = 5e-69
Identities = 121/169 (71%), Positives = 144/169 (84%), Gaps = 2/169 (1%)
Frame = -3
Query: 899 MPSLPSSSGSENVEDSNKKNSSM--VYLNVYDLTPANNYLYVFGVGIFHSGIEVHGMEYG 726
+P+L SSS S + D + +++ VYLNVYDLTP NNYLY FG+GIFHSGIE H +EY
Sbjct: 3 VPTLSSSSCSSDERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYC 62
Query: 725 FGAHEYPTSGVFEVQPRSCPGFIFRRSILLGSTDMSYSEFRSFIERLSAKYHGDTYHLIA 546
+GAHEYPTSGV+EV+PR+CPGFIFRRS+LLG+T MS S+FRS++E+LS KYHGDTYHLIA
Sbjct: 63 YGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIA 122
Query: 545 KNCNHFTDEVCQQLTGKAIPAWVNRLARVGSFCNCLLPESLQVAAVRHL 399
KNCNHFT+EVC QLTGK IP W+NRLARVGSFCNCLLPES+Q+ AV L
Sbjct: 123 KNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSAL 171
>ref|NP_199542.1| putative protein; protein id: At5g47310.1 [Arabidopsis thaliana]
gi|8809614|dbj|BAA97165.1| contains similarity to
EREBP-4~gene_id:MQL5.17 [Arabidopsis thaliana]
gi|29029104|gb|AAO64931.1| At5g47310 [Arabidopsis
thaliana]
Length = 245
Score = 261 bits (667), Expect = 1e-68
Identities = 118/164 (71%), Positives = 140/164 (84%)
Frame = -3
Query: 893 SLPSSSGSENVEDSNKKNSSMVYLNVYDLTPANNYLYVFGVGIFHSGIEVHGMEYGFGAH 714
SL S E E + + + + VYLNVYDLTP NNYLY FG+GIFHSGIE HG EYG+GAH
Sbjct: 9 SLCSGEDKEEEEINGEGSLTPVYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAH 68
Query: 713 EYPTSGVFEVQPRSCPGFIFRRSILLGSTDMSYSEFRSFIERLSAKYHGDTYHLIAKNCN 534
EY +SGVFEV+PRSCPGFIFRRS+LLG+T MS S+FRSF+E+LS KYHGDTYHLIAKNCN
Sbjct: 69 EYSSSGVFEVEPRSCPGFIFRRSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCN 128
Query: 533 HFTDEVCQQLTGKAIPAWVNRLARVGSFCNCLLPESLQVAAVRH 402
HFT+EVC Q+TGK IP W+NR+ARVGSFCNC+LPES+Q+++V H
Sbjct: 129 HFTEEVCLQVTGKPIPGWINRMARVGSFCNCILPESIQLSSVNH 172
>pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|emb|CAB10530.1|
EREBP-4 like protein [Arabidopsis thaliana]
gi|7268501|emb|CAB78752.1| EREBP-4 like protein
[Arabidopsis thaliana]
Length = 603
Score = 249 bits (637), Expect = 3e-65
Identities = 121/191 (63%), Positives = 144/191 (75%), Gaps = 24/191 (12%)
Frame = -3
Query: 899 MPSLPSSSGSENVEDSNKKNSSM--VYLNVYDLTPANNYLYVFGVGIFHSGIE------- 747
+P+L SSS S + D + +++ VYLNVYDLTP NNYLY FG+GIFHSGIE
Sbjct: 360 VPTLSSSSCSSDERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEDFTCYFS 419
Query: 746 ---------------VHGMEYGFGAHEYPTSGVFEVQPRSCPGFIFRRSILLGSTDMSYS 612
H +EY +GAHEYPTSGV+EV+PR+CPGFIFRRS+LLG+T MS S
Sbjct: 420 YYSLLSLTQLFNFNVAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRS 479
Query: 611 EFRSFIERLSAKYHGDTYHLIAKNCNHFTDEVCQQLTGKAIPAWVNRLARVGSFCNCLLP 432
+FRS++E+LS KYHGDTYHLIAKNCNHFT+EVC QLTGK IP W+NRLARVGSFCNCLLP
Sbjct: 480 DFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLP 539
Query: 431 ESLQVAAVRHL 399
ES+Q+ AV L
Sbjct: 540 ESIQLTAVSAL 550
>gb|AAM65611.1| unknown [Arabidopsis thaliana]
Length = 251
Score = 211 bits (538), Expect = 1e-53
Identities = 90/143 (62%), Positives = 118/143 (81%)
Frame = -3
Query: 830 VYLNVYDLTPANNYLYVFGVGIFHSGIEVHGMEYGFGAHEYPTSGVFEVQPRSCPGFIFR 651
VYLNVYDLTP N Y+Y G+GIFHSG+EVHG+EY FGAH+Y TSGVFEV+PR CPGF F+
Sbjct: 43 VYLNVYDLTPINGYIYWAGLGIFHSGVEVHGVEYAFGAHDYATSGVFEVEPRQCPGFKFK 102
Query: 650 RSILLGSTDMSYSEFRSFIERLSAKYHGDTYHLIAKNCNHFTDEVCQQLTGKAIPAWVNR 471
+SI +G+T+++ ++ R F+E ++ Y+G+ YHLI KNCNHF +VC +LTGK IP WVNR
Sbjct: 103 KSIFIGTTNLNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPKWVNR 162
Query: 470 LARVGSFCNCLLPESLQVAAVRH 402
LA++GS C+C+LPESL++ AV H
Sbjct: 163 LAQIGSVCSCILPESLKITAVCH 185
>ref|NP_564513.1| expressed protein; protein id: At1g47740.1, supported by cDNA:
40816. [Arabidopsis thaliana] gi|19424079|gb|AAL87252.1|
unknown protein [Arabidopsis thaliana]
gi|21280795|gb|AAM45073.1| unknown protein [Arabidopsis
thaliana]
Length = 279
Score = 211 bits (538), Expect = 1e-53
Identities = 90/143 (62%), Positives = 118/143 (81%)
Frame = -3
Query: 830 VYLNVYDLTPANNYLYVFGVGIFHSGIEVHGMEYGFGAHEYPTSGVFEVQPRSCPGFIFR 651
VYLNVYDLTP N Y+Y G+GIFHSG+EVHG+EY FGAH+Y TSGVFEV+PR CPGF F+
Sbjct: 71 VYLNVYDLTPINGYIYWAGLGIFHSGVEVHGVEYAFGAHDYATSGVFEVEPRQCPGFKFK 130
Query: 650 RSILLGSTDMSYSEFRSFIERLSAKYHGDTYHLIAKNCNHFTDEVCQQLTGKAIPAWVNR 471
+SI +G+T+++ ++ R F+E ++ Y+G+ YHLI KNCNHF +VC +LTGK IP WVNR
Sbjct: 131 KSIFIGTTNLNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPKWVNR 190
Query: 470 LARVGSFCNCLLPESLQVAAVRH 402
LA++GS C+C+LPESL++ AV H
Sbjct: 191 LAQIGSVCSCILPESLKITAVCH 213
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,150,757
Number of Sequences: 1393205
Number of extensions: 18869956
Number of successful extensions: 44828
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 42175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44778
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54910356336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
