Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011388A_C01 KMC011388A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_115842.1| cytochrome c oxidase subunit III [Iguana iguana... 32 2.3
ref|NP_687792.1| ATP-dependent RNA helicase, DEAD/DEAH box famil... 31 3.0
ref|NP_735247.1| Unknown [Streptococcus agalactiae NEM316] gi|23... 31 3.0
ref|NP_436316.1| Putative LysR-family transcriptional regulator ... 31 3.0
gb|AAD13584.1| cytochrome c oxidase III [Gambelia wislizenii] 31 3.0
>ref|NP_115842.1| cytochrome c oxidase subunit III [Iguana iguana]
gi|13751156|emb|CAC37089.1| cytochrome c oxidase subunit
III [Iguana iguana]
Length = 261
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -3
Query: 217 VFGTLF*VSSSACFRIGYVAMGSEFQILLVLI*I*MIYIRFFIFIFTTVHHFG 59
V+GT F V++ F +V +GS F I+ + IR +F FTT HHFG
Sbjct: 192 VYGTTFFVATG--FHGLHVIIGSSFLIICL--------IRQMLFHFTTSHHFG 234
>ref|NP_687792.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R] gi|22533794|gb|AAM99664.1|AE014227_8
ATP-dependent RNA helicase, DEAD/DEAH box family
[Streptococcus agalactiae 2603V/R]
Length = 528
Score = 31.2 bits (69), Expect = 3.0
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Frame = +1
Query: 88 K*KTLYISSISKLIL-EGSEILNPSLHNQS*NMQRKTPKTK--------FQKPVSR-ALR 237
K K L ++ I LIL E E+LN + + P+T+ P+ R ++
Sbjct: 135 KRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDPIKRIGVK 194
Query: 238 FHQLENKNPEHVPIDAADRCSINVLILLPRCQVPDRFPVSRRRRQCSFPQIS---GRRRY 408
F K+PEHV I A + ++NV R + ++F R P++S GR +
Sbjct: 195 FM----KDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKR 250
Query: 409 R 411
R
Sbjct: 251 R 251
>ref|NP_735247.1| Unknown [Streptococcus agalactiae NEM316]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus
agalactiae NEM316]
Length = 528
Score = 31.2 bits (69), Expect = 3.0
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Frame = +1
Query: 88 K*KTLYISSISKLIL-EGSEILNPSLHNQS*NMQRKTPKTK--------FQKPVSR-ALR 237
K K L ++ I LIL E E+LN + + P+T+ P+ R ++
Sbjct: 135 KRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDPIKRIGVK 194
Query: 238 FHQLENKNPEHVPIDAADRCSINVLILLPRCQVPDRFPVSRRRRQCSFPQIS---GRRRY 408
F K+PEHV I A + ++NV R + ++F R P++S GR +
Sbjct: 195 FM----KDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKR 250
Query: 409 R 411
R
Sbjct: 251 R 251
>ref|NP_436316.1| Putative LysR-family transcriptional regulator [Sinorhizobium
meliloti] gi|25505381|pir||F95395 probable LysR-family
transcription regulator [imported] - Sinorhizobium
meliloti (strain 1021) magaplasmid pSymA
gi|14524223|gb|AAK65728.1| Putative LysR-family
transcriptional regulator [Sinorhizobium meliloti]
Length = 327
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = -3
Query: 382 EMSTDDAAVKQGSGQVPDTSAEGSER*LS-------IDLRRRSAHVPGFCFLAGENVKLV 224
+M +D V+ G G +P A+ ER LS ++L PG F GE+V+ +
Sbjct: 46 QMFSDPLFVRTGGGMLPTARAQSLERSLSLLKAVLDVELEAGRVSAPGATFEPGESVRDI 105
Query: 223 TLV 215
+V
Sbjct: 106 RIV 108
>gb|AAD13584.1| cytochrome c oxidase III [Gambelia wislizenii]
Length = 141
Score = 31.2 bits (69), Expect = 3.0
Identities = 22/54 (40%), Positives = 30/54 (54%)
Frame = -3
Query: 217 VFGTLF*VSSSACFRIGYVAMGSEFQILLVLI*I*MIYIRFFIFIFTTVHHFGS 56
V+GT F V++ F +V +GS F I+ + IR +F FTT HHFGS
Sbjct: 96 VYGTTFFVATG--FHGLHVIIGSSFLIVCL--------IRQTMFHFTTNHHFGS 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,319,909
Number of Sequences: 1393205
Number of extensions: 8016307
Number of successful extensions: 22091
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22074
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
