Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011309A_C01 KMC011309A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_194857.1| similar to hydroxyproline-rich glycoprotein-rel... 32 5.0
ref|XP_229579.1| similar to hypothetical protein FLJ10652 [Homo ... 32 8.5
emb|CAB99427.1| NADH dehydrogenase [Manuleopsis dinteri] 32 8.5
ref|NP_485656.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 32 8.5
>ref|XP_194857.1| similar to hydroxyproline-rich glycoprotein-related; protein id:
At4g11430.1 [Arabidopsis thaliana] [Mus musculus]
Length = 348
Score = 32.3 bits (72), Expect = 5.0
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 567 PFPSTLALSTGNSQISQSYIPSHVTAMDVDQRQINHYQMLSLSSQNLLVNNSLNPSFSLA 388
P P +++ G S I+ H R + H+Q S ++ + L+PS +
Sbjct: 125 PSPEDSSITRGLSPITTGLTHHH--------RTLTHHQRTHPSPEDSPITRGLDPSPEDS 176
Query: 387 MMTPRLLHSPNSNENPSSSH 328
+T RL H ++ +P +SH
Sbjct: 177 PITRRLTHHQRTHPSPENSH 196
>ref|XP_229579.1| similar to hypothetical protein FLJ10652 [Homo sapiens] [Rattus
norvegicus]
Length = 1432
Score = 31.6 bits (70), Expect = 8.5
Identities = 27/92 (29%), Positives = 38/92 (40%), Gaps = 5/92 (5%)
Frame = -1
Query: 555 TLALSTGNSQISQSYIPSHVTAMDVDQRQINHYQMLSLSSQNLLVNNS-----LNPSFSL 391
T T +S+ Q + + D D ++ H SL + L N S LNPS S
Sbjct: 1013 TKGSKTKDSREEQQHFSAKCYKKDKDNLKMRHDS--SLKMEQKLKNTSSECDRLNPSKSS 1070
Query: 390 AMMTPRLLHSPNSNENPSSSHRDQDFTSK*QR 295
+ TP +LH SN + + S Q QR
Sbjct: 1071 KIATPEILHVKTSNSDKNMSFFKQASQESLQR 1102
>emb|CAB99427.1| NADH dehydrogenase [Manuleopsis dinteri]
Length = 698
Score = 31.6 bits (70), Expect = 8.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 559 INIGFVNWEFSNFTVLYSFTCYSNGCGSKANQPLSDVKFEFSKSVSE*FSQSIFQ 395
+N+ F N+ S T LYS + + GC + N+ ++ ++S S FS++ +Q
Sbjct: 449 LNVNFQNYSGSQNTPLYSISLWGKGCSKRINKNFRLLRMNNNES-SSFFSKTTYQ 502
>ref|NP_485656.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25359471|pir||AB2008
hypothetical protein all1616 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135436|dbj|BAB77982.1|
ORF_ID:all1616~hypothetical protein [Nostoc sp. PCC
7120]
Length = 227
Score = 31.6 bits (70), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = -1
Query: 414 SLNPSFSLAMMTPRLLHSPNSNENPSSSHRDQDFTSK*QRLS 289
SLNP S ++ + H P P +S R + FTSK + +S
Sbjct: 182 SLNPDISTKLLPISVTHPPIGQFTPQTSDRSESFTSKLKAIS 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,155,084
Number of Sequences: 1393205
Number of extensions: 10115568
Number of successful extensions: 23139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23116
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
