Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011271A_C01 KMC011271A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN77145.1| fiber protein Fb2 [Gossypium barbadense] 158 4e-38
gb|AAO42046.1| unknown protein [Arabidopsis thaliana] gi|2882768... 129 4e-29
ref|NP_198051.1| drought-induced protein - like; protein id: At5... 121 8e-27
pir||T01774 hypothetical protein A_IG002P16.10 - Arabidopsis tha... 117 1e-25
gb|AAL67123.1| AT3g06760/F3E22_10 [Arabidopsis thaliana] gi|2213... 105 4e-22
>gb|AAN77145.1| fiber protein Fb2 [Gossypium barbadense]
Length = 220
Score = 158 bits (400), Expect = 4e-38
Identities = 83/123 (67%), Positives = 96/123 (77%)
Frame = -2
Query: 598 FKMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNSAADPLLSSFISPLA 419
FKMQRKRKSRKGGS+STLSLL+KELREGNLQ+L GGSSCIVSSSNSA DPLLS FI P+
Sbjct: 98 FKMQRKRKSRKGGSHSTLSLLKKELREGNLQTLLGGSSCIVSSSNSAPDPLLSLFILPMV 157
Query: 418 NEPTSSQPHLHTETRSTKKSLDETVSKRNVETPTLSDKDKEENAKRCEFVQGMLLSTMLD 239
++ S QP TET KS D S+R ++ LS KD+EE AKRCE VQG+LLST++D
Sbjct: 158 DDFVSDQPPFRTETSRNNKSSDMNKSERTTQSSPLSVKDQEEKAKRCECVQGLLLSTIVD 217
Query: 238 DDL 230
D L
Sbjct: 218 DIL 220
>gb|AAO42046.1| unknown protein [Arabidopsis thaliana] gi|28827686|gb|AAO50687.1|
unknown protein [Arabidopsis thaliana]
Length = 223
Score = 129 bits (323), Expect = 4e-29
Identities = 69/126 (54%), Positives = 93/126 (73%), Gaps = 3/126 (2%)
Frame = -2
Query: 598 FKMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNS---AADPLLSSFIS 428
FKM RKRK R+GGSYSTLS+LR+E +GN QSLFGGSSCIVSSS+S AADPLLSSFIS
Sbjct: 98 FKMHRKRKPRRGGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFIS 157
Query: 427 PLANEPTSSQPHLHTETRSTKKSLDETVSKRNVETPTLSDKDKEENAKRCEFVQGMLLST 248
P+A+ +++ + ET KK+ + + ++N + +LS +D ++ KR EFV+ +L ST
Sbjct: 158 PIADGFFTTESCISAETGPVKKTTIQCLPEQNAKKTSLSAEDHKQKLKRSEFVRELLSST 217
Query: 247 MLDDDL 230
+LDD L
Sbjct: 218 ILDDSL 223
>ref|NP_198051.1| drought-induced protein - like; protein id: At5g26990.1
[Arabidopsis thaliana]
Length = 222
Score = 121 bits (303), Expect = 8e-27
Identities = 66/125 (52%), Positives = 93/125 (73%), Gaps = 2/125 (1%)
Frame = -2
Query: 598 FKMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNS--AADPLLSSFISP 425
FK+ RKRKSR+GG+ S LS+L++E +GN QSLF G+S VSSS++ AADPLLSSFISP
Sbjct: 98 FKVTRKRKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFISP 157
Query: 424 LANEPTSSQPHLHTETRSTKKSLDETVSKRNVETPTLSDKDKEENAKRCEFVQGMLLSTM 245
+A++ S+ L +T S KK+L++++ +RNVE +LS +D E K+ EFVQG+L S +
Sbjct: 158 MADDFFISESSLCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSEFVQGILSSMI 217
Query: 244 LDDDL 230
L+D L
Sbjct: 218 LEDGL 222
>pir||T01774 hypothetical protein A_IG002P16.10 - Arabidopsis thaliana
gi|2191171|gb|AAB61057.1| similar to A. thaliana DI19
mRNA (NID:g469110) [Arabidopsis thaliana]
Length = 231
Score = 117 bits (293), Expect = 1e-25
Identities = 64/125 (51%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Frame = -2
Query: 598 FKMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNS--AADPLLSSFISP 425
+ + RKRKSR+GG+ S LS+L++E +GN QSLF G+S VSSS++ AADPLLSSFISP
Sbjct: 107 YYVTRKRKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFISP 166
Query: 424 LANEPTSSQPHLHTETRSTKKSLDETVSKRNVETPTLSDKDKEENAKRCEFVQGMLLSTM 245
+A++ S+ L +T S KK+L++++ +RNVE +LS +D E K+ EFVQG+L S +
Sbjct: 167 MADDFFISESSLCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSEFVQGILSSMI 226
Query: 244 LDDDL 230
L+D L
Sbjct: 227 LEDGL 231
>gb|AAL67123.1| AT3g06760/F3E22_10 [Arabidopsis thaliana]
gi|22137252|gb|AAM91471.1| AT3g06760/F3E22_10
[Arabidopsis thaliana]
Length = 224
Score = 105 bits (262), Expect = 4e-22
Identities = 63/125 (50%), Positives = 87/125 (69%), Gaps = 3/125 (2%)
Frame = -2
Query: 598 FKMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNSAADPLLSSFI--SP 425
FK+QR+R+ R+GG ST L+KELRE NLQSL GGSS SS+N +DPLLSSF+ SP
Sbjct: 101 FKVQRRRRLRRGGYSSTYLALKKELREANLQSLLGGSSSFTSSTNIDSDPLLSSFMFNSP 160
Query: 424 LANEPTS-SQPHLHTETRSTKKSLDETVSKRNVETPTLSDKDKEENAKRCEFVQGMLLST 248
N+ + S + +TK S+ E++ KR+++ LS +D +E AK+ EFV+G+LLST
Sbjct: 161 SVNQSANKSATPVTVGNAATKVSIKESL-KRDIQEAPLSGED-QEKAKKSEFVRGLLLST 218
Query: 247 MLDDD 233
ML+DD
Sbjct: 219 MLEDD 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,896,408
Number of Sequences: 1393205
Number of extensions: 10046949
Number of successful extensions: 27875
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 26806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27809
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
