Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011237A_C01 KMC011237A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200875.1| 60S ribosomal protein L12 - like; protein id: A... 97 7e-20
ref|NP_190911.1| 60S RIBOSOMAL PROTEIN L12 -like; protein id: At... 94 1e-18
ref|NP_181256.1| 60S ribosomal protein L12; protein id: At2g3719... 93 1e-18
sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 gi|2677830|gb|AAB... 87 1e-16
ref|NP_587897.1| 60s ribosomal protein l12 [Schizosaccharomyces ... 74 1e-12
>ref|NP_200875.1| 60S ribosomal protein L12 - like; protein id: At5g60670.1,
supported by cDNA: 42276., supported by cDNA:
gi_14517557, supported by cDNA: gi_18700231 [Arabidopsis
thaliana] gi|9759331|dbj|BAB09840.1| 60S ribosomal
protein L12 [Arabidopsis thaliana]
gi|14517558|gb|AAK62669.1| AT5g60670/mup24_80
[Arabidopsis thaliana] gi|18700232|gb|AAL77726.1|
AT5g60670/mup24_80 [Arabidopsis thaliana]
gi|21593741|gb|AAM65708.1| 60S ribosomal protein
L12-like [Arabidopsis thaliana]
Length = 166
Score = 97.4 bits (241), Expect = 7e-20
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = -2
Query: 483 IKHNGNVSLDDVVVEIVRVMKPRSIAKDLSGTIKEILGTCVSGGCMVDGKDPKDLQP*AS 304
IKHNGN+S DDV+ EI ++M+PRSIAK+LSGT+KEILGTCVS GC VDGKDPKDLQ +
Sbjct: 99 IKHNGNISFDDVI-EIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEIN 157
Query: 303 GGD 295
GD
Sbjct: 158 SGD 160
>ref|NP_190911.1| 60S RIBOSOMAL PROTEIN L12 -like; protein id: At3g53430.1
[Arabidopsis thaliana] gi|11276750|pir||T45883 60S
RIBOSOMAL PROTEIN L12-like - Arabidopsis thaliana
gi|6729494|emb|CAB67650.1| 60S RIBOSOMAL PROTEIN
L12-like [Arabidopsis thaliana]
gi|22655306|gb|AAM98243.1| 60S ribosomal protein
L12-like protein [Arabidopsis thaliana]
gi|27311969|gb|AAO00950.1| 60S ribosomal protein
L12-like protein [Arabidopsis thaliana]
Length = 166
Score = 93.6 bits (231), Expect = 1e-18
Identities = 44/56 (78%), Positives = 50/56 (88%)
Frame = -2
Query: 483 IKHNGNVSLDDVVVEIVRVMKPRSIAKDLSGTIKEILGTCVSGGCMVDGKDPKDLQ 316
IKHNGN+S DDV EI R+M+PRSIAK+LSGT++EILGTCVS GC VDGKDPKDLQ
Sbjct: 99 IKHNGNISFDDVT-EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQ 153
>ref|NP_181256.1| 60S ribosomal protein L12; protein id: At2g37190.1, supported by
cDNA: 23523., supported by cDNA: gi_13926285
[Arabidopsis thaliana] gi|19884128|sp|P50883|RL12_ARATH
60S ribosomal protein L12 gi|25295163|pir||F84789 60S
ribosomal protein L12 [imported] - Arabidopsis thaliana
gi|4371282|gb|AAD18140.1| 60S ribosomal protein L12
[Arabidopsis thaliana]
gi|13926286|gb|AAK49612.1|AF372896_1 At2g37190/T2N18.5
[Arabidopsis thaliana] gi|21592414|gb|AAM64365.1| 60S
ribosomal protein L12 [Arabidopsis thaliana]
gi|27363340|gb|AAO11589.1| At2g37190/T2N18.5
[Arabidopsis thaliana]
Length = 166
Score = 93.2 bits (230), Expect = 1e-18
Identities = 44/63 (69%), Positives = 52/63 (81%)
Frame = -2
Query: 483 IKHNGNVSLDDVVVEIVRVMKPRSIAKDLSGTIKEILGTCVSGGCMVDGKDPKDLQP*AS 304
IKHNGN+S DDV EI R+M+PRSIAK+LSGT++EILGTCVS GC VDGKDPKD+Q
Sbjct: 99 IKHNGNISFDDVT-EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQ 157
Query: 303 GGD 295
G+
Sbjct: 158 DGE 160
>sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 gi|2677830|gb|AAB97143.1| ribosomal
protein L12 [Prunus armeniaca]
Length = 166
Score = 87.0 bits (214), Expect = 1e-16
Identities = 42/63 (66%), Positives = 53/63 (83%)
Frame = -2
Query: 483 IKHNGNVSLDDVVVEIVRVMKPRSIAKDLSGTIKEILGTCVSGGCMVDGKDPKDLQP*AS 304
IKH+G++SLDDV+ EI ++MK RS+AK+L+GT+KEIL TCVS GC VDGKDPKDLQ +
Sbjct: 99 IKHSGHISLDDVI-EIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIA 157
Query: 303 GGD 295
GD
Sbjct: 158 DGD 160
>ref|NP_587897.1| 60s ribosomal protein l12 [Schizosaccharomyces pombe]
gi|19075423|ref|NP_587923.1| 60s ribosomal protein
L12.1/L12A [Schizosaccharomyces pombe]
gi|6094003|sp|O75000|RL12_SCHPO 60S ribosomal protein
L12 gi|7493305|pir||T41103 60s ribosomal protein l12 -
fission yeast (Schizosaccharomyces pombe)
gi|3560267|emb|CAA20752.1| 60s ribosomal protein
L12.1/L12A [Schizosaccharomyces pombe]
gi|3702628|emb|CAA21221.1| 60s ribosomal protein l12
[Schizosaccharomyces pombe]
Length = 165
Score = 73.6 bits (179), Expect = 1e-12
Identities = 34/63 (53%), Positives = 48/63 (75%)
Frame = -2
Query: 483 IKHNGNVSLDDVVVEIVRVMKPRSIAKDLSGTIKEILGTCVSGGCMVDGKDPKDLQP*AS 304
+ H+GNVSLD+++ E+ R M+ +S+AK+LSGT+KEILGT S GC VDGK+P D+Q
Sbjct: 98 VAHSGNVSLDEII-EVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEID 156
Query: 303 GGD 295
G+
Sbjct: 157 NGE 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,229,453
Number of Sequences: 1393205
Number of extensions: 12928109
Number of successful extensions: 120598
Number of sequences better than 10.0: 1066
Number of HSP's better than 10.0 without gapping: 67851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100150
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
