Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011178A_C01 KMC011178A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565446.1| expressed protein; protein id: At2g19080.1, sup... 77 2e-13
ref|NP_189638.1| hypothetical protein; protein id: At3g30190.1 [... 37 0.23
gb|EAA26841.1| hypothetical protein [Neurospora crassa] 35 0.87
ref|NP_731075.1| CG31367-PA [Drosophila melanogaster] gi|1618312... 34 1.9
gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum] 34 1.9
>ref|NP_565446.1| expressed protein; protein id: At2g19080.1, supported by cDNA:
37338., supported by cDNA: gi_17979482 [Arabidopsis
thaliana] gi|7487289|pir||T00528 hypothetical protein
At2g19080 [imported] - Arabidopsis thaliana
gi|3176710|gb|AAD12026.1| expressed protein [Arabidopsis
thaliana] gi|17979483|gb|AAL50078.1| At2g19080/T20K24.9
[Arabidopsis thaliana] gi|21593237|gb|AAM65186.1|
unknown [Arabidopsis thaliana]
gi|22655436|gb|AAM98310.1| At2g19080/T20K24.9
[Arabidopsis thaliana]
Length = 315
Score = 77.4 bits (189), Expect = 2e-13
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = -3
Query: 637 LVHPHLVRYVEHCKTEIIEADTSPSSGPHFHTNASSSASRSQSTKSSKPKSKPQREKTKE 458
L H +LVRY E K+E +EA +S S P H+ SS KSSKPKSKP+ EKT+E
Sbjct: 221 LEHSNLVRYAEKLKSEFLEASSS-SPSPPLHSFPSSFPR-----KSSKPKSKPKVEKTEE 274
Query: 457 EKSYKRRSTYFVVAQLLTIVVFLTLMTTYDDGVEADEAGYDYDE 326
EK +K+R+ +F+ AQ L +V+++++M G +DE Y+ ++
Sbjct: 275 EKKFKKRARFFLAAQFLAVVIYVSVM----GGGSSDELEYEDED 314
>ref|NP_189638.1| hypothetical protein; protein id: At3g30190.1 [Arabidopsis
thaliana]
Length = 263
Score = 37.0 bits (84), Expect = 0.23
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = -3
Query: 574 TSPSSGPHFHTNASSSASRSQSTKSSKPKSKPQREKTKEEKSYKRRSTYFVVAQL--LTI 401
T +G +++SSS+S S S+ SS S T S S+YFVV L L +
Sbjct: 21 TKQCNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSYFVVPLLRYLHV 80
Query: 400 VVF--LTLMTTYDDGVEAD----EAGYDYD 329
V+F LTLM + A+ +A DYD
Sbjct: 81 VIFDHLTLMMLHAYSTLANPEDFQAVADYD 110
>gb|EAA26841.1| hypothetical protein [Neurospora crassa]
Length = 498
Score = 35.0 bits (79), Expect = 0.87
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -3
Query: 574 TSPSSGPHFHTNASSSASRSQSTKSSKPKSKP-QREKTKEEKSYKRR 437
+S ++ P H A+ S SRSQ T+ KP+ KP ++ K K+ +++K +
Sbjct: 38 SSTTANPARHRPAARSTSRSQPTQLGKPQGKPTEKPKAKQPENHKAK 84
>ref|NP_731075.1| CG31367-PA [Drosophila melanogaster] gi|16183129|gb|AAL13636.1|
GH18144p [Drosophila melanogaster]
gi|23170658|gb|AAN13374.1| CG31367-PA [Drosophila
melanogaster]
Length = 397
Score = 33.9 bits (76), Expect = 1.9
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -3
Query: 535 SSSASRSQSTKSSKPKSKPQREKTKEEKSYKRRST 431
S S + + KSSK K K + EK+K EKS KR +T
Sbjct: 89 SRSKDKDREHKSSKEKDKDKEEKSKSEKSKKRDTT 123
>gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum]
Length = 1483
Score = 33.9 bits (76), Expect = 1.9
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 574 TSPSSGPHFHTNASSSASRSQSTKSSKPKSKPQREKTKEEKSYKR 440
TS SS P T +++ + +S K SKPK ++EK K EK ++
Sbjct: 1030 TSSSSVPTTTTTTTTTTTEKESKKESKPKKLTKKEKEKLEKEKEK 1074
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,369,103
Number of Sequences: 1393205
Number of extensions: 12145860
Number of successful extensions: 36903
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 32806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36451
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
