Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011162A_C01 KMC011162A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 (Putrescine aminopropyl... 219 1e-56
sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 (Putrescine aminopropyl... 201 7e-51
sp|O82147|SPDE_COFAR Spermidine synthase (Putrescine aminopropyl... 199 2e-50
sp|Q96556|SPD1_DATST Spermidine synthase 1 (Putrescine aminoprop... 196 1e-49
sp|O48659|SPD2_HYONI Spermidine synthase 2 (Putrescine aminoprop... 195 3e-49
>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 (Putrescine aminopropyltransferase 1) (SPDSY
1) gi|4104972|gb|AAD02231.1| spermidine synthase 1
[Pisum sativum]
Length = 334
Score = 219 bits (559), Expect = 1e-56
Identities = 101/109 (92%), Positives = 106/109 (96%)
Frame = -3
Query: 579 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 400
PGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS
Sbjct: 226 PGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 285
Query: 399 VDFKHPVNPIDEDDSQQSARPLKFYHREIHSAAFCLPSFAKRAIGAKAN 253
VDFKHPVNPIDE+DSQQ+ARPLKFY+REIHSAAFCLPSFAKRAI +K N
Sbjct: 286 VDFKHPVNPIDENDSQQAARPLKFYNREIHSAAFCLPSFAKRAIASKEN 334
>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 (Putrescine aminopropyltransferase 2) (SPDSY
2) gi|4104974|gb|AAD02232.1| spermidine synthase 2
[Pisum sativum]
Length = 342
Score = 201 bits (510), Expect = 7e-51
Identities = 92/107 (85%), Positives = 99/107 (91%)
Frame = -3
Query: 579 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 400
PGGV+CTQAESIWLHM IIEDIV+NCR IFKGSVNYAWTTVPTYPSGMIGFMLCSTEGP
Sbjct: 234 PGGVMCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPL 293
Query: 399 VDFKHPVNPIDEDDSQQSARPLKFYHREIHSAAFCLPSFAKRAIGAK 259
VDFKHPVNPID+ D Q+S RPLKFY+ EIH+AAFCLPSFAKR IG+K
Sbjct: 294 VDFKHPVNPIDQKDCQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSK 340
>sp|O82147|SPDE_COFAR Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY)
gi|3242659|dbj|BAA29033.1| spermidine synthase [Coffea
arabica]
Length = 316
Score = 199 bits (507), Expect = 2e-50
Identities = 92/110 (83%), Positives = 102/110 (92%), Gaps = 1/110 (0%)
Frame = -3
Query: 579 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 400
PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP
Sbjct: 207 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPP 266
Query: 399 VDFKHPVNPIDEDDSQ-QSARPLKFYHREIHSAAFCLPSFAKRAIGAKAN 253
VDFKHP+NPID +D + ++ +PLKFY+ EIHSAAFCLPSFAK+ I +KAN
Sbjct: 267 VDFKHPINPIDANDGRSKTMKPLKFYNSEIHSAAFCLPSFAKKVIDSKAN 316
>sp|Q96556|SPD1_DATST Spermidine synthase 1 (Putrescine aminopropyltransferase 1) (SPDSY
1) gi|1561577|emb|CAA69420.1| spermidine synthase 1
[Datura stramonium]
Length = 308
Score = 196 bits (499), Expect = 1e-49
Identities = 91/108 (84%), Positives = 99/108 (91%), Gaps = 1/108 (0%)
Frame = -3
Query: 579 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 400
PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP+
Sbjct: 199 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPA 258
Query: 399 VDFKHPVNPIDEDDSQQSAR-PLKFYHREIHSAAFCLPSFAKRAIGAK 259
VDFK+P+NP+D DDS R PLKFY+ EIHSA+FCLPSFAKR I +K
Sbjct: 259 VDFKNPINPVDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVIESK 306
>sp|O48659|SPD2_HYONI Spermidine synthase 2 (Putrescine aminopropyltransferase 2) (SPDSY
2) gi|2821957|dbj|BAA24534.1| spermidine synthase 2
[Hyoscyamus niger]
Length = 308
Score = 195 bits (496), Expect = 3e-49
Identities = 91/109 (83%), Positives = 99/109 (90%), Gaps = 1/109 (0%)
Frame = -3
Query: 579 PGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPS 400
PGGVVCTQAESIWLHMHIIEDIV+NCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP+
Sbjct: 199 PGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPA 258
Query: 399 VDFKHPVNPIDEDDSQQSAR-PLKFYHREIHSAAFCLPSFAKRAIGAKA 256
VDFK+P+NPID DDS R PLKFY+ EIHSA+FCLPSFAKR I + A
Sbjct: 259 VDFKNPINPIDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVIESNA 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,091,744
Number of Sequences: 1393205
Number of extensions: 10458545
Number of successful extensions: 22496
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 21892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22402
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
