Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011140A_C01 KMC011140A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567673.1| expressed protein; protein id: At4g22920.1, sup... 88 6e-17
gb|AAM64476.1| unknown [Arabidopsis thaliana] 88 6e-17
ref|NP_192928.1| putative protein; protein id: At4g11910.1 [Arab... 79 4e-14
ref|NP_564489.1| expressed protein; protein id: At1g44000.1, sup... 56 2e-07
gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana] 56 2e-07
>ref|NP_567673.1| expressed protein; protein id: At4g22920.1, supported by cDNA:
29391., supported by cDNA: gi_17380887, supported by
cDNA: gi_20465936 [Arabidopsis thaliana]
gi|7486565|pir||T05123 hypothetical protein F7H19.100 -
Arabidopsis thaliana gi|3292817|emb|CAA19807.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269139|emb|CAB79247.1| hypothetical protein
[Arabidopsis thaliana] gi|17380888|gb|AAL36256.1|
unknown protein [Arabidopsis thaliana]
gi|20465937|gb|AAM20154.1| unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/89 (47%), Positives = 51/89 (57%)
Frame = -3
Query: 547 YPELQDALVWVYFHSKIPEFNKVQSWGPLKEAAAPSGGSPEKEGEGVKMPDPCPEECECC 368
YPELQ+ALVWVYFHS + EFNKV+ WGPL EA +P G E E C +EC CC
Sbjct: 177 YPELQEALVWVYFHSNVNEFNKVECWGPLWEAVSPDGHKTETLPEA-----RCADECSCC 231
Query: 367 FPPPPALDPIPWSEEVPSPHYEAFDGVGT 281
F P + IPWS + + + G T
Sbjct: 232 F---PTVSSIPWSHSLSNEGVNGYSGTQT 257
>gb|AAM64476.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/89 (47%), Positives = 51/89 (57%)
Frame = -3
Query: 547 YPELQDALVWVYFHSKIPEFNKVQSWGPLKEAAAPSGGSPEKEGEGVKMPDPCPEECECC 368
YPELQ+ALVWVYFHS + EFNKV+ WGPL EA +P G E E C +EC CC
Sbjct: 177 YPELQEALVWVYFHSNVNEFNKVECWGPLWEAVSPDGHKTETLPEA-----RCADECSCC 231
Query: 367 FPPPPALDPIPWSEEVPSPHYEAFDGVGT 281
F P + IPWS + + + G T
Sbjct: 232 F---PTVSSIPWSHSLSNEGVNGYSGTQT 257
>ref|NP_192928.1| putative protein; protein id: At4g11910.1 [Arabidopsis thaliana]
gi|7487452|pir||T09350 hypothetical protein T26M18.120 -
Arabidopsis thaliana gi|5002526|emb|CAB44329.1| putative
protein [Arabidopsis thaliana]
gi|7267892|emb|CAB78234.1| putative protein [Arabidopsis
thaliana]
Length = 466
Score = 79.0 bits (193), Expect = 4e-14
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = -3
Query: 547 YPELQDALVWVYFHSKIPEFNKVQSWGPLKEAAAPSGGSPEKEGEGVKMPD-PCPEECEC 371
+PELQ++ VWVYFHS IPE+NKV+ WGPL EA + + +P+ PCP+EC+C
Sbjct: 173 HPELQESPVWVYFHSNIPEYNKVECWGPLWEAMSQHQHDGRTHKKSETLPELPCPDECKC 232
Query: 370 CFP 362
CFP
Sbjct: 233 CFP 235
Score = 76.3 bits (186), Expect = 2e-13
Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -3
Query: 547 YPELQDALVWVYFHSKIPEFNKVQSWGPLKEAAAPSG-GSPEKEGEGVKMPDPCPEECEC 371
YPEL +A VWVYFHS IP+FNKV+ WG L EA + G +P E + PC ++C C
Sbjct: 366 YPELHEAFVWVYFHSNIPKFNKVECWGRLCEATSHDGCKTPTCE---ILPEPPCFDKCSC 422
Query: 370 CFPPPPALDPIPWSEEVPSPHYEAFDGV 287
CF P + IPWS H E + V
Sbjct: 423 CF---PTVSTIPWSHSHGCSHGEEDNNV 447
>ref|NP_564489.1| expressed protein; protein id: At1g44000.1, supported by cDNA:
gi_15028026, supported by cDNA: gi_20259312 [Arabidopsis
thaliana] gi|15028027|gb|AAK76544.1| unknown protein
[Arabidopsis thaliana] gi|20259313|gb|AAM14392.1|
unknown protein [Arabidopsis thaliana]
Length = 260
Score = 56.2 bits (134), Expect = 2e-07
Identities = 21/32 (65%), Positives = 27/32 (83%)
Frame = -3
Query: 544 PELQDALVWVYFHSKIPEFNKVQSWGPLKEAA 449
PEL DA VWVYFHS P++N+++ WGPLK+AA
Sbjct: 194 PELMDAYVWVYFHSSTPKYNRIECWGPLKDAA 225
>gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana]
Length = 299
Score = 56.2 bits (134), Expect = 2e-07
Identities = 21/32 (65%), Positives = 27/32 (83%)
Frame = -3
Query: 544 PELQDALVWVYFHSKIPEFNKVQSWGPLKEAA 449
PEL DA VWVYFHS P++N+++ WGPLK+AA
Sbjct: 194 PELMDAYVWVYFHSSTPKYNRIECWGPLKDAA 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,445,883
Number of Sequences: 1393205
Number of extensions: 14578853
Number of successful extensions: 70819
Number of sequences better than 10.0: 310
Number of HSP's better than 10.0 without gapping: 50766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66498
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
