Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011127A_C01 KMC011127A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196695.1| separation anxiety protein - like; protein id: ... 103 2e-21
ref|NP_079422.1| hypothetical protein FLJ13194 [Homo sapiens] gi... 72 1e-18
ref|XP_148131.1| similar to separation anxiety [Mus musculus] 72 1e-18
ref|NP_082384.1| Mak3p homolog; RIKEN cDNA 2600005K24 gene [Mus ... 72 1e-18
ref|NP_524779.1| separation anxiety CG12352-PA gi|6980078|gb|AAF... 60 9e-16
>ref|NP_196695.1| separation anxiety protein - like; protein id: At5g11340.1
[Arabidopsis thaliana] gi|8953396|emb|CAB96669.1|
separation anxiety protein-like [Arabidopsis thaliana]
gi|28416617|gb|AAO42839.1| At5g11340 [Arabidopsis
thaliana]
Length = 164
Score = 103 bits (257), Expect = 2e-21
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 6/85 (7%)
Frame = -1
Query: 639 ACRLEKKEGGGQVRIYIMTLGVLAPYRGLGIGTKLLNHVLDLCSKPNLSEVYLHVQTHHE 460
ACRLEKKE G +R+YIMTLGVLAPYRG+GIG+ LLNHVLD+CSK N+ E+YLHVQT++E
Sbjct: 63 ACRLEKKESGA-MRVYIMTLGVLAPYRGIGIGSNLLNHVLDMCSKQNMCEIYLHVQTNNE 121
Query: 459 DAIHLLQEI------RLRNYRNNPE 403
DAI ++ ++NY N E
Sbjct: 122 DAIKFYKKFGFEITDTIQNYYINIE 146
Score = 57.0 bits (136), Expect = 2e-07
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -2
Query: 446 FYKKFGFEITETIQNYYTNITPPDCYILTRLTAPS 342
FYKKFGFEIT+TIQNYY NI P DCY++++ A S
Sbjct: 126 FYKKFGFEITDTIQNYYINIEPRDCYVVSKSFAQS 160
>ref|NP_079422.1| hypothetical protein FLJ13194 [Homo sapiens]
gi|10434848|dbj|BAB14397.1| unnamed protein product
[Homo sapiens] gi|10435107|dbj|BAB14490.1| unnamed
protein product [Homo sapiens]
gi|15215284|gb|AAH12731.1|AAH12731 hypothetical protein
FLJ13194 [Homo sapiens]
Length = 169
Score = 72.0 bits (175), Expect(2) = 1e-18
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = -1
Query: 636 CRLEKKEGGGQVRIYIMTLGVLAPYRGLGIGTKLLNHVLDLCSKP-NLSEVYLHVQTHHE 460
CR++ + Q R+YIMTLG LAPYR LGIGTK+LNHVL++C K +YLHVQ +E
Sbjct: 61 CRVDHSQN--QKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNE 118
Query: 459 DAI 451
AI
Sbjct: 119 SAI 121
Score = 43.1 bits (100), Expect(2) = 1e-18
Identities = 20/36 (55%), Positives = 25/36 (68%), Gaps = 1/36 (2%)
Frame = -2
Query: 446 FYKKFGFEITETIQNYYTNITPPDCYILTR-LTAPS 342
FY+KFGFEI ET +NYY I P D ++L + L PS
Sbjct: 123 FYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPS 158
>ref|XP_148131.1| similar to separation anxiety [Mus musculus]
Length = 169
Score = 72.0 bits (175), Expect(2) = 1e-18
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = -1
Query: 636 CRLEKKEGGGQVRIYIMTLGVLAPYRGLGIGTKLLNHVLDLCSKP-NLSEVYLHVQTHHE 460
CR++ + Q R+YIMTLG LAPYR LGIGTK+LNHVL++C K +YLHVQ +E
Sbjct: 61 CRVDHSQN--QKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNE 118
Query: 459 DAI 451
AI
Sbjct: 119 SAI 121
Score = 43.1 bits (100), Expect(2) = 1e-18
Identities = 20/36 (55%), Positives = 25/36 (68%), Gaps = 1/36 (2%)
Frame = -2
Query: 446 FYKKFGFEITETIQNYYTNITPPDCYILTR-LTAPS 342
FY+KFGFEI ET +NYY I P D ++L + L PS
Sbjct: 123 FYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPS 158
>ref|NP_082384.1| Mak3p homolog; RIKEN cDNA 2600005K24 gene [Mus musculus]
gi|12847105|dbj|BAB27439.1| unnamed protein product [Mus
musculus]
Length = 168
Score = 72.0 bits (175), Expect(2) = 1e-18
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = -1
Query: 636 CRLEKKEGGGQVRIYIMTLGVLAPYRGLGIGTKLLNHVLDLCSKP-NLSEVYLHVQTHHE 460
CR++ + Q R+YIMTLG LAPYR LGIGTK+LNHVL++C K +YLHVQ +E
Sbjct: 60 CRVDHSQN--QKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNE 117
Query: 459 DAI 451
AI
Sbjct: 118 SAI 120
Score = 43.1 bits (100), Expect(2) = 1e-18
Identities = 20/36 (55%), Positives = 25/36 (68%), Gaps = 1/36 (2%)
Frame = -2
Query: 446 FYKKFGFEITETIQNYYTNITPPDCYILTR-LTAPS 342
FY+KFGFEI ET +NYY I P D ++L + L PS
Sbjct: 122 FYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPS 157
>ref|NP_524779.1| separation anxiety CG12352-PA gi|6980078|gb|AAF34715.1|AF225902_1
separation anxiety protein [Drosophila melanogaster]
gi|10727641|gb|AAG22284.1| CG12352-PA [Drosophila
melanogaster] gi|17944762|gb|AAL48448.1| AT27602p
[Drosophila melanogaster]
Length = 184
Score = 59.7 bits (143), Expect(2) = 9e-16
Identities = 29/68 (42%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Frame = -1
Query: 636 CRLEKKEGGGQVRIYIMTLGVLAPYRGLGIGTKLLNHVLDLCSKP-NLSEVYLHVQTHHE 460
CR++ E Q R+YIMTLG L+PYR LGIGT + H+++ K N ++LHVQ ++
Sbjct: 61 CRIDNTEN--QRRLYIMTLGCLSPYRRLGIGTVMFEHIMNFAEKDGNFDSIFLHVQINNN 118
Query: 459 DAIHLLQE 436
AI ++
Sbjct: 119 GAIEFYKK 126
Score = 45.4 bits (106), Expect(2) = 9e-16
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 446 FYKKFGFEITETIQNYYTNITPPDCYIL---TRLTAPSPTQTIT 324
FYKKFGFEI +T + YY I P D ++L R TAP+ T T
Sbjct: 123 FYKKFGFEIVDTKEQYYKRIEPADAHVLQKTLRRTAPNSNSTAT 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,345,879
Number of Sequences: 1393205
Number of extensions: 12825184
Number of successful extensions: 30385
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 29440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30356
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
