Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011079A_C01 KMC011079A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q36675|COX3_PLAVI Cytochrome c oxidase polypeptide III gi|119... 34 1.1
emb|CAA76835.1| cytochrome c oxidase subunit III [Plasmodium vivax] 34 1.1
gb|AAD05207.1| cytochrome c oxidase subunit III [Plasmodium vivax] 34 1.1
ref|NP_703431.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
emb|CAD55697.1| sulphate transporter [Triticum aestivum] 33 3.3
>sp|Q36675|COX3_PLAVI Cytochrome c oxidase polypeptide III gi|1197178|dbj|BAA11509.1|
cytochrome c oxidase subunit III [Plasmodium vivax]
Length = 263
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 276 RGAPLETLSIGFLLFLLGILYFSEQNLEF*FLGAC--GSLLGTLISGFCSFDLHY 118
+G LE SI F+++LLG + S Q E+ LG C ++ GTL +C LH+
Sbjct: 144 KGMSLEISSIVFIIYLLGECFASLQTTEYLHLGYCINDAISGTLF--YCVTGLHF 196
>emb|CAA76835.1| cytochrome c oxidase subunit III [Plasmodium vivax]
Length = 263
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 276 RGAPLETLSIGFLLFLLGILYFSEQNLEF*FLGAC--GSLLGTLISGFCSFDLHY 118
+G LE SI F+++LLG + S Q E+ LG C ++ GTL +C LH+
Sbjct: 144 KGMSLEISSIVFIIYLLGECFASLQTTEYLHLGYCINDAISGTLF--YCVTGLHF 196
>gb|AAD05207.1| cytochrome c oxidase subunit III [Plasmodium vivax]
Length = 249
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 276 RGAPLETLSIGFLLFLLGILYFSEQNLEF*FLGAC--GSLLGTLISGFCSFDLHY 118
+G LE SI F+++LLG + S Q E+ LG C ++ GTL +C LH+
Sbjct: 130 KGMSLEISSIVFIIYLLGECFASLQTTEYLHLGYCINDAISGTLF--YCVTGLHF 182
>ref|NP_703431.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504572|emb|CAD51451.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 262
Score = 32.7 bits (73), Expect = 3.3
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 18 YSYKKRKSSNHNQN*GSLHPKYKEKLAKHG*R-----IHNANQKNKILK*ECQEDSHKLQ 182
YSYKK+K S+H H KYK+K + H + H+ ++K K D+HK
Sbjct: 172 YSYKKKKHSHH-------HSKYKKKHSHHRSKNKKKHSHHHSKKEK----HISNDTHKSD 220
Query: 183 ETKTLSFVQKSTRYLKEITK 242
E K + KE K
Sbjct: 221 EKHRKYISSKKKKIKKEEKK 240
>emb|CAD55697.1| sulphate transporter [Triticum aestivum]
Length = 667
Score = 32.7 bits (73), Expect = 3.3
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = -2
Query: 261 ETLSIG--FLLFLLGILYFSEQNLEF*FLGACGSLLGTLISGFCSFDLH 121
+T+ IG FL FLL Y +++N + ++ A L+ +IS FC F H
Sbjct: 267 QTILIGASFLAFLLTTKYIAKKNKKLFWVSAIAPLISVVISTFCVFITH 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,866,645
Number of Sequences: 1393205
Number of extensions: 9960983
Number of successful extensions: 23219
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23207
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
