Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011061A_C01 KMC011061A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM53339.1| WD40-repeat protein [Arabidopsis thaliana] 260 1e-68
pir||T51507 WD40-repeat protein - Arabidopsis thaliana gi|975572... 260 1e-68
ref|NP_663371.1| transducin (beta)-like 3; similar to transducin... 119 4e-26
dbj|BAC38381.1| unnamed protein product [Mus musculus] 119 4e-26
ref|NP_006444.2| transducin beta-like 3; WD-repeat protein SAZD ... 119 4e-26
>gb|AAM53339.1| WD40-repeat protein [Arabidopsis thaliana]
Length = 823
Score = 260 bits (664), Expect = 1e-68
Identities = 115/156 (73%), Positives = 139/156 (88%)
Frame = +1
Query: 121 LKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTA 300
LK NYRC +L+QFY GGP++VSSDGSFIACACG+ I IVDS ++S++ST++G+S+++TA
Sbjct: 6 LKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGESDTLTA 65
Query: 301 LALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRK 480
LALSPDD LLFS+GHSRQIRVWDL TLKC+RSWKGHEGPVM M+CH SGGLLAT GADRK
Sbjct: 66 LALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRK 125
Query: 481 VLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQLL 588
VLVWDVDGG+CTH+F+GH GVVS ++FHPD K +L
Sbjct: 126 VLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNIL 161
Score = 50.1 bits (118), Expect = 2e-05
Identities = 26/107 (24%), Positives = 47/107 (43%)
Frame = +1
Query: 250 NASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCM 429
N RS + + + ++A++ +D+L+ + R +W L L V + KGH+ + +
Sbjct: 488 NLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSV 547
Query: 430 SCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPD 570
+ T D+ V +W + G C F+GH V F D
Sbjct: 548 EFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITD 594
Score = 49.7 bits (117), Expect = 3e-05
Identities = 30/112 (26%), Positives = 54/112 (47%), Gaps = 5/112 (4%)
Frame = +1
Query: 184 VSSDGSFIACACG-ESIKIVDSANASIRSTLQGDSESVTAL--ALSPDDNLLFSSGHS-R 351
+ + F+A A E +++ D A S L G E V +L +S N+L +G +
Sbjct: 367 LGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDK 426
Query: 352 QIRVWDLSTLKCVRSWKGHEGPVMCMS-CHPSGGLLATGGADRKVLVWDVDG 504
+R+W+ ++ C+ GH G ++ ++ S +G DR + VW +DG
Sbjct: 427 TVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDG 478
Score = 49.3 bits (116), Expect = 4e-05
Identities = 30/133 (22%), Positives = 65/133 (48%)
Frame = +1
Query: 94 LSESMEALRLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTL 273
L + + + LK + R + +++ F T V+++ G +++KI ++ S T
Sbjct: 528 LPDLVHVVTLKGHKRRIFSVE-FSTVDQCVMTASGD-------KTVKIWAISDGSCLKTF 579
Query: 274 QGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGL 453
+G + SV + D S G +++W+++T +C+ ++ HE V ++ +
Sbjct: 580 EGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEM 639
Query: 454 LATGGADRKVLVW 492
+ATGG D + +W
Sbjct: 640 IATGGGDAVINLW 652
Score = 47.8 bits (112), Expect = 1e-04
Identities = 34/134 (25%), Positives = 62/134 (45%), Gaps = 4/134 (2%)
Frame = +1
Query: 172 GPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALA-LSPDDNLLFSSGHS 348
G V++D F + E+ V+ + L G +E + + L ++ L + +
Sbjct: 324 GLLCVTADQQFFFYSVVEN---VEETELVLSKRLVGYNEEIADMKFLGDEEQFLAVATNL 380
Query: 349 RQIRVWDLSTLKCVRSWKGHEGPVMCM-SCHPSGG--LLATGGADRKVLVWDVDGGYCTH 519
++RV+D++T+ C GH+ V+ + +C S G L+ TG D+ V +W+ C
Sbjct: 381 EEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIG 440
Query: 520 FFKGHGGVVSCVMF 561
GH G + V F
Sbjct: 441 VGTGHNGDILAVAF 454
Score = 45.1 bits (105), Expect = 7e-04
Identities = 20/89 (22%), Positives = 44/89 (48%)
Frame = +1
Query: 268 TLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSG 447
TL+G + ++ S D + ++ + +++W +S C+++++GH V+ S G
Sbjct: 536 TLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDG 595
Query: 448 GLLATGGADRKVLVWDVDGGYCTHFFKGH 534
+ GAD + +W+V+ C + H
Sbjct: 596 TQFVSCGADGLLKLWNVNTSECIATYDQH 624
Score = 40.0 bits (92), Expect = 0.022
Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 6/115 (5%)
Frame = +1
Query: 187 SSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALALSPDDN--LLFSSGHSRQIR 360
+S G + + D +G V+++ PD N +L S +R
Sbjct: 112 ASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVR 171
Query: 361 VWDLSTL----KCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYC 513
VWDL+ KC+ + H V ++ G L + G D+ V +WD+ C
Sbjct: 172 VWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSC 226
>pir||T51507 WD40-repeat protein - Arabidopsis thaliana
gi|9755727|emb|CAC01839.1| WD40-repeat protein
[Arabidopsis thaliana]
Length = 876
Score = 260 bits (664), Expect = 1e-68
Identities = 115/156 (73%), Positives = 139/156 (88%)
Frame = +1
Query: 121 LKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTA 300
LK NYRC +L+QFY GGP++VSSDGSFIACACG+ I IVDS ++S++ST++G+S+++TA
Sbjct: 6 LKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGESDTLTA 65
Query: 301 LALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRK 480
LALSPDD LLFS+GHSRQIRVWDL TLKC+RSWKGHEGPVM M+CH SGGLLAT GADRK
Sbjct: 66 LALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRK 125
Query: 481 VLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQLL 588
VLVWDVDGG+CTH+F+GH GVVS ++FHPD K +L
Sbjct: 126 VLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNIL 161
Score = 50.1 bits (118), Expect = 2e-05
Identities = 26/107 (24%), Positives = 47/107 (43%)
Frame = +1
Query: 250 NASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCM 429
N RS + + + ++A++ +D+L+ + R +W L L V + KGH+ + +
Sbjct: 488 NLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSV 547
Query: 430 SCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPD 570
+ T D+ V +W + G C F+GH V F D
Sbjct: 548 EFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITD 594
Score = 49.7 bits (117), Expect = 3e-05
Identities = 30/112 (26%), Positives = 54/112 (47%), Gaps = 5/112 (4%)
Frame = +1
Query: 184 VSSDGSFIACACG-ESIKIVDSANASIRSTLQGDSESVTAL--ALSPDDNLLFSSGHS-R 351
+ + F+A A E +++ D A S L G E V +L +S N+L +G +
Sbjct: 367 LGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDK 426
Query: 352 QIRVWDLSTLKCVRSWKGHEGPVMCMS-CHPSGGLLATGGADRKVLVWDVDG 504
+R+W+ ++ C+ GH G ++ ++ S +G DR + VW +DG
Sbjct: 427 TVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDG 478
Score = 49.3 bits (116), Expect = 4e-05
Identities = 30/133 (22%), Positives = 65/133 (48%)
Frame = +1
Query: 94 LSESMEALRLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTL 273
L + + + LK + R + +++ F T V+++ G +++KI ++ S T
Sbjct: 528 LPDLVHVVTLKGHKRRIFSVE-FSTVDQCVMTASGD-------KTVKIWAISDGSCLKTF 579
Query: 274 QGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGL 453
+G + SV + D S G +++W+++T +C+ ++ HE V ++ +
Sbjct: 580 EGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEM 639
Query: 454 LATGGADRKVLVW 492
+ATGG D + +W
Sbjct: 640 IATGGGDAVINLW 652
Score = 47.8 bits (112), Expect = 1e-04
Identities = 34/134 (25%), Positives = 62/134 (45%), Gaps = 4/134 (2%)
Frame = +1
Query: 172 GPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALA-LSPDDNLLFSSGHS 348
G V++D F + E+ V+ + L G +E + + L ++ L + +
Sbjct: 324 GLLCVTADQQFFFYSVVEN---VEETELVLSKRLVGYNEEIADMKFLGDEEQFLAVATNL 380
Query: 349 RQIRVWDLSTLKCVRSWKGHEGPVMCM-SCHPSGG--LLATGGADRKVLVWDVDGGYCTH 519
++RV+D++T+ C GH+ V+ + +C S G L+ TG D+ V +W+ C
Sbjct: 381 EEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIG 440
Query: 520 FFKGHGGVVSCVMF 561
GH G + V F
Sbjct: 441 VGTGHNGDILAVAF 454
Score = 45.1 bits (105), Expect = 7e-04
Identities = 20/89 (22%), Positives = 44/89 (48%)
Frame = +1
Query: 268 TLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSG 447
TL+G + ++ S D + ++ + +++W +S C+++++GH V+ S G
Sbjct: 536 TLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDG 595
Query: 448 GLLATGGADRKVLVWDVDGGYCTHFFKGH 534
+ GAD + +W+V+ C + H
Sbjct: 596 TQFVSCGADGLLKLWNVNTSECIATYDQH 624
Score = 40.0 bits (92), Expect = 0.022
Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 6/115 (5%)
Frame = +1
Query: 187 SSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALALSPDDN--LLFSSGHSRQIR 360
+S G + + D +G V+++ PD N +L S +R
Sbjct: 112 ASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVR 171
Query: 361 VWDLSTL----KCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYC 513
VWDL+ KC+ + H V ++ G L + G D+ V +WD+ C
Sbjct: 172 VWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSC 226
>ref|NP_663371.1| transducin (beta)-like 3; similar to transducin beta-like 3;
WD-repeat protein SAZD [Mus musculus]
gi|18043536|gb|AAH19504.1| Unknown (protein for
MGC:28734) [Mus musculus]
Length = 802
Score = 119 bits (297), Expect = 4e-26
Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Frame = +1
Query: 118 RLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSAN-ASIRSTLQGDSESV 294
R K+NY ++ FY GG + G ++ C CG + I+D A+ A +RS Q D E +
Sbjct: 10 RFKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDI 69
Query: 295 TALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG-HEGPVMCMSCHPSGGLLATGGA 471
T+ LSPDD +L ++ + + W R WK H PV M+ + LLATGG
Sbjct: 70 TSFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGC 129
Query: 472 DRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQLLF 591
D V VWD+ Y TH F+G GVV V FHPDP + LLF
Sbjct: 130 DGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLF 169
Score = 51.6 bits (122), Expect = 7e-06
Identities = 27/100 (27%), Positives = 49/100 (49%)
Frame = +1
Query: 262 RSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHP 441
++T + + + +LA+SP+D LL + R ++W L + + + GH + + P
Sbjct: 473 QTTQRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSP 532
Query: 442 SGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMF 561
+ +LAT AD + +W + C F+GH V V F
Sbjct: 533 TDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAF 572
Score = 49.3 bits (116), Expect = 4e-05
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +1
Query: 226 SIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG 405
+IK+ + S T +G SV +A + L SSG +++W + + +CVR+
Sbjct: 545 TIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDA 604
Query: 406 HEGPVMCMSCHPSGGLLATGGADRKVLVW 492
HE V + C TGG+D ++++W
Sbjct: 605 HEDKVWGLHCSQLDDHAITGGSDSRIILW 633
Score = 45.8 bits (107), Expect = 4e-04
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Frame = +1
Query: 217 CGESIKIVDSANASIRSTLQGDSESVTALALSPDDN--LLFSSGHSRQIRVWDLSTLKCV 390
C ++++ D +G V +A PD LLFSS IRVW L C+
Sbjct: 129 CDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCL 188
Query: 391 RSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPD 570
H V +S G + + G D+ +VWD+ T V + V+
Sbjct: 189 AVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQ 248
Query: 571 PEKQL 585
P L
Sbjct: 249 PAPAL 253
Score = 45.1 bits (105), Expect = 7e-04
Identities = 19/86 (22%), Positives = 40/86 (46%)
Frame = +1
Query: 277 GDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLL 456
G + + SP D +L ++ I++W L C+++++GH+ V+ ++ G L
Sbjct: 520 GHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQL 579
Query: 457 ATGGADRKVLVWDVDGGYCTHFFKGH 534
+ G+D + +W + C H
Sbjct: 580 LSSGSDGLLKLWTIKSNECVRTLDAH 605
Score = 37.4 bits (85), Expect = 0.14
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Frame = +1
Query: 214 ACGESIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVR 393
A SI++ + S + L +VT+L+ S + + SSG + VWDL + + R
Sbjct: 172 AVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTR 231
Query: 394 SWKGHEG----------PVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTH 519
+ E P + SG T G + VW+ G C +
Sbjct: 232 TVPVFESVEASVLLPEQPAPALGVKSSGLHFLTAGDQGILRVWEAASGQCVY 283
Score = 37.0 bits (84), Expect = 0.19
Identities = 26/121 (21%), Positives = 57/121 (46%), Gaps = 1/121 (0%)
Frame = +1
Query: 142 VPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALA-LSPD 318
+P L+Q T ++D + ++ + ++ + ++ G SE V + L P
Sbjct: 288 MPGLRQELTHCTLARAAD-LLLTVTADHNLLLYEAHSLQLQKQFAGYSEEVLDVRFLGPS 346
Query: 319 DNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDV 498
D+ + + +S ++V++L TL C + GH V+ + G L A+ D+ + +W +
Sbjct: 347 DSHIVVASNSPCLKVFELQTLAC-QILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWKM 405
Query: 499 D 501
+
Sbjct: 406 N 406
Score = 35.0 bits (79), Expect = 0.71
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 20/142 (14%)
Frame = +1
Query: 202 FIACACGESIKIVDSANASIRSTL---QGDSESVTALALSP-DDNLLFSSGHSRQIRVWD 369
F +CA +SI+I A + + G + SV + S ++ L + +++W
Sbjct: 391 FASCAKDQSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWP 450
Query: 370 L-STLKCVRSWKGHEGPVMCMS-----CH----------PSGGLLATGGADRKVLVWDVD 501
L L +S GPV+ + CH P+ LLATG DR +W +
Sbjct: 451 LPEALLANKSTAADSGPVLLQAQTTQRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALP 510
Query: 502 GGYCTHFFKGHGGVVSCVMFHP 567
F GH + V F P
Sbjct: 511 QCQLLGVFTGHRRGLWNVQFSP 532
>dbj|BAC38381.1| unnamed protein product [Mus musculus]
Length = 801
Score = 119 bits (297), Expect = 4e-26
Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Frame = +1
Query: 118 RLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSAN-ASIRSTLQGDSESV 294
R K+NY ++ FY GG + G ++ C CG + I+D A+ A +RS Q D E +
Sbjct: 10 RFKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDI 69
Query: 295 TALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG-HEGPVMCMSCHPSGGLLATGGA 471
T+ LSPDD +L ++ + + W R WK H PV M+ + LLATGG
Sbjct: 70 TSFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGC 129
Query: 472 DRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQLLF 591
D V VWD+ Y TH F+G GVV V FHPDP + LLF
Sbjct: 130 DGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLF 169
Score = 51.6 bits (122), Expect = 7e-06
Identities = 27/100 (27%), Positives = 49/100 (49%)
Frame = +1
Query: 262 RSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHP 441
++T + + + +LA+SP+D LL + R ++W L + + + GH + + P
Sbjct: 472 QTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSP 531
Query: 442 SGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMF 561
+ +LAT AD + +W + C F+GH V V F
Sbjct: 532 TDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAF 571
Score = 49.3 bits (116), Expect = 4e-05
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +1
Query: 226 SIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG 405
+IK+ + S T +G SV +A + L SSG +++W + + +CVR+
Sbjct: 544 TIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDA 603
Query: 406 HEGPVMCMSCHPSGGLLATGGADRKVLVW 492
HE V + C TGG+D ++++W
Sbjct: 604 HEDKVWGLHCSQLDDHAITGGSDSRIILW 632
Score = 45.8 bits (107), Expect = 4e-04
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Frame = +1
Query: 217 CGESIKIVDSANASIRSTLQGDSESVTALALSPDDN--LLFSSGHSRQIRVWDLSTLKCV 390
C ++++ D +G V +A PD LLFSS IRVW L C+
Sbjct: 129 CDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCL 188
Query: 391 RSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPD 570
H V +S G + + G D+ +VWD+ T V + V+
Sbjct: 189 AVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQ 248
Query: 571 PEKQL 585
P L
Sbjct: 249 PAPAL 253
Score = 45.1 bits (105), Expect = 7e-04
Identities = 19/86 (22%), Positives = 40/86 (46%)
Frame = +1
Query: 277 GDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLL 456
G + + SP D +L ++ I++W L C+++++GH+ V+ ++ G L
Sbjct: 519 GHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQL 578
Query: 457 ATGGADRKVLVWDVDGGYCTHFFKGH 534
+ G+D + +W + C H
Sbjct: 579 LSSGSDGLLKLWTIKSNECVRTLDAH 604
Score = 37.7 bits (86), Expect = 0.11
Identities = 35/141 (24%), Positives = 55/141 (38%), Gaps = 19/141 (13%)
Frame = +1
Query: 202 FIACACGESIKIVDSANASIRSTL---QGDSESVTALALSP-DDNLLFSSGHSRQIRVWD 369
F +CA +SI+I A + + G + SV + S ++ L + +++W
Sbjct: 391 FASCAKDQSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWP 450
Query: 370 LSTLKCVRSWKGHEGPVMCMS-----CH----------PSGGLLATGGADRKVLVWDVDG 504
L +S GPV+ + CH P+ LLATG DR +W +
Sbjct: 451 LPEALLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQ 510
Query: 505 GYCTHFFKGHGGVVSCVMFHP 567
F GH + V F P
Sbjct: 511 CQLLGVFTGHRRGLWNVQFSP 531
Score = 37.4 bits (85), Expect = 0.14
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Frame = +1
Query: 214 ACGESIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVR 393
A SI++ + S + L +VT+L+ S + + SSG + VWDL + + R
Sbjct: 172 AVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTR 231
Query: 394 SWKGHEG----------PVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTH 519
+ E P + SG T G + VW+ G C +
Sbjct: 232 TVPVFESVEASVLLPEQPAPALGVKSSGLHFLTAGDQGILRVWEAASGQCVY 283
Score = 37.0 bits (84), Expect = 0.19
Identities = 26/121 (21%), Positives = 57/121 (46%), Gaps = 1/121 (0%)
Frame = +1
Query: 142 VPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALA-LSPD 318
+P L+Q T ++D + ++ + ++ + ++ G SE V + L P
Sbjct: 288 MPGLRQELTHCTLARAAD-LLLTVTADHNLLLYEAHSLQLQKQFAGYSEEVLDVRFLGPS 346
Query: 319 DNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDV 498
D+ + + +S ++V++L TL C + GH V+ + G L A+ D+ + +W +
Sbjct: 347 DSHIVVASNSPCLKVFELQTLAC-QILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWKM 405
Query: 499 D 501
+
Sbjct: 406 N 406
>ref|NP_006444.2| transducin beta-like 3; WD-repeat protein SAZD [Homo sapiens]
gi|15559295|gb|AAH14007.1|AAH14007 Unknown (protein for
MGC:20031) [Homo sapiens]
gi|16307379|gb|AAH10231.1|AAH10231 Unknown (protein for
MGC:17508) [Homo sapiens]
Length = 808
Score = 119 bits (297), Expect = 4e-26
Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Frame = +1
Query: 118 RLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASI-RSTLQGDSESV 294
R K+NY ++ FY GG + G + C CG + I++ A+ ++ RS Q D E +
Sbjct: 10 RFKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRSLEQEDQEDI 69
Query: 295 TALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG-HEGPVMCMSCHPSGGLLATGGA 471
TA LSPD+ +L ++ + + W R WK H PV M+ P+ LLATGG
Sbjct: 70 TAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGC 129
Query: 472 DRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQLLF 591
D V VWD+ Y TH F+G GVV V FHPDP + LLF
Sbjct: 130 DGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLF 169
Score = 53.9 bits (128), Expect = 1e-06
Identities = 26/100 (26%), Positives = 49/100 (49%)
Frame = +1
Query: 262 RSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHP 441
++T + + + ++A++P+D LL + R ++W L + + + GH + C+ P
Sbjct: 472 QTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSP 531
Query: 442 SGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMF 561
+LAT AD + +W + C F+GH V V F
Sbjct: 532 MDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAF 571
Score = 48.1 bits (113), Expect = 8e-05
Identities = 31/125 (24%), Positives = 49/125 (38%), Gaps = 2/125 (1%)
Frame = +1
Query: 217 CGESIKIVDSANASIRSTLQGDSESVTALALSPDDN--LLFSSGHSRQIRVWDLSTLKCV 390
C ++++ D +G V +A PD LLFSS IRVW L C+
Sbjct: 129 CDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCL 188
Query: 391 RSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPD 570
H V ++ G + + G D+ ++WD+ T V + V+ +
Sbjct: 189 AVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLPEE 248
Query: 571 PEKQL 585
P QL
Sbjct: 249 PVSQL 253
Score = 46.6 bits (109), Expect = 2e-04
Identities = 25/89 (28%), Positives = 41/89 (45%)
Frame = +1
Query: 226 SIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG 405
+IK+ + S T +G SV +A L SSG +++W + +CVR+
Sbjct: 544 TIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTLDA 603
Query: 406 HEGPVMCMSCHPSGGLLATGGADRKVLVW 492
HE V + C TG +D +V++W
Sbjct: 604 HEDKVWGLHCSRLDDHALTGASDSRVILW 632
Score = 45.4 bits (106), Expect = 5e-04
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +1
Query: 277 GDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLL 456
G + + SP D +L ++ I++W L C+++++GH+ V+ ++ G L
Sbjct: 519 GHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQL 578
Query: 457 ATGGADRKVLVWDVDGGYCTHFFKGH 534
+ G+D V +W + C H
Sbjct: 579 LSSGSDGLVKLWTIKNNECVRTLDAH 604
Score = 40.4 bits (93), Expect = 0.017
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Frame = +1
Query: 214 ACGESIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVR 393
A +I++ + S + L +VT+LA S D + + SSG + +WDL + + R
Sbjct: 172 ATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATR 231
Query: 394 SWKGHEG----------PVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTH 519
+ E PV + G T G + VW+ G C +
Sbjct: 232 TVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVY 283
Score = 38.5 bits (88), Expect = 0.064
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 19/141 (13%)
Frame = +1
Query: 202 FIACACGESIKIVDSANAS-IRSTLQGD--SESVTALALSP-DDNLLFSSGHSRQIRVWD 369
F +CA +S++I A + QG + SV + S ++ L + +++W
Sbjct: 391 FASCAKDQSVRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWP 450
Query: 370 LSTLKCVRSWKGHEGPVMCMS-----CH----------PSGGLLATGGADRKVLVWDVDG 504
L ++ GP++ + CH P+ LLATG DR +W +
Sbjct: 451 LPKALLSKNTAPDNGPILLQAQTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQ 510
Query: 505 GYCTHFFKGHGGVVSCVMFHP 567
F GH + CV F P
Sbjct: 511 CQLLGVFSGHRRGLWCVQFSP 531
Score = 35.4 bits (80), Expect = 0.54
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 196 GSFIACACGESIKIVDSANASIRSTLQGDSESVTALA-LSPDDNLLFSSGHSRQIRVWDL 372
G + ++ + ++ + ++ G SE V + L P+D+ + + +S ++V++L
Sbjct: 305 GVVLTATADHNLLLYEARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLKVFEL 364
Query: 373 STLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVW 492
T C + GH V+ + G L A+ D+ V +W
Sbjct: 365 QTSAC-QILHGHTDIVLALDVFRKGWLFASCAKDQSVRIW 403
Score = 33.5 bits (75), Expect = 2.1
Identities = 35/158 (22%), Positives = 65/158 (40%), Gaps = 11/158 (6%)
Frame = +1
Query: 121 LKSNYRCVPALQQFYTGGPYVVSSDGSFI-------ACACGESIKIVDSANASIRSTLQG 279
L ++Y V +L F G ++SS I +C ++ + +S A++
Sbjct: 191 LTAHYSAVTSLA-FSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLP--- 246
Query: 280 DSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGP----VMCMSCHPSG 447
E V+ L + ++G +RVW+ ++ +CV + GP C H +
Sbjct: 247 -EEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGPGQELTHCTLAH-TA 304
Query: 448 GLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMF 561
G++ T AD +L+++ F G+ V V F
Sbjct: 305 GVVLTATADHNLLLYEARSLRLQKQFAGYSEEVLDVRF 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,905,745
Number of Sequences: 1393205
Number of extensions: 15774798
Number of successful extensions: 75232
Number of sequences better than 10.0: 2982
Number of HSP's better than 10.0 without gapping: 52730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69716
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
