Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011058A_C01 KMC011058A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arab... 124 2e-27
pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana ... 120 2e-26
ref|NP_567363.1| putative protein; protein id: At4g10590.1, supp... 120 2e-26
ref|NP_174562.1| hypothetical protein; protein id: At1g32850.1 [... 119 4e-26
gb|AAN04210.1| Putative ubiquitin carboxyl terminal hydrolase [O... 101 1e-20
>ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arabidopsis thaliana]
gi|7487639|pir||T04192 hypothetical protein T4F9.30 -
Arabidopsis thaliana gi|4539435|emb|CAB40023.1| putative
protein [Arabidopsis thaliana] gi|7267754|emb|CAB78180.1|
putative protein [Arabidopsis thaliana]
Length = 928
Score = 124 bits (310), Expect = 2e-27
Identities = 54/67 (80%), Positives = 63/67 (93%)
Frame = -2
Query: 756 DGQSYKYNLYAISNHYGGLGGGHYTAYAKLIDENKWYHFDDSHVTPADEAEIKSSAAYVL 577
+GQSY Y LYA+SNHYGGLGGGHYTAYAKLID+NKWYHFDDSHV+ +E+EI++SAAYVL
Sbjct: 836 NGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVL 895
Query: 576 FYQRVRS 556
FY+RVRS
Sbjct: 896 FYRRVRS 902
>pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana
gi|4539437|emb|CAB40025.1| putative protein [Arabidopsis
thaliana] gi|7267756|emb|CAB78182.1| putative protein
[Arabidopsis thaliana]
Length = 937
Score = 120 bits (302), Expect = 2e-26
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -2
Query: 750 QSYKYNLYAISNHYGGLGGGHYTAYAKLIDENKWYHFDDSHVTPADEAEIKSSAAYVLFY 571
QSY Y LYA+SNHYGGLGGGHYTAYAKLID+N+WYHFDDSHV+ +E+EIK+SAAYVLFY
Sbjct: 859 QSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFY 918
Query: 570 QRVRS 556
+RVRS
Sbjct: 919 RRVRS 923
>ref|NP_567363.1| putative protein; protein id: At4g10590.1, supported by cDNA:
gi_15450766 [Arabidopsis thaliana]
gi|15450767|gb|AAK96655.1| putative protein [Arabidopsis
thaliana]
Length = 910
Score = 120 bits (302), Expect = 2e-26
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -2
Query: 750 QSYKYNLYAISNHYGGLGGGHYTAYAKLIDENKWYHFDDSHVTPADEAEIKSSAAYVLFY 571
QSY Y LYA+SNHYGGLGGGHYTAYAKLID+N+WYHFDDSHV+ +E+EIK+SAAYVLFY
Sbjct: 832 QSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFY 891
Query: 570 QRVRS 556
+RVRS
Sbjct: 892 RRVRS 896
>ref|NP_174562.1| hypothetical protein; protein id: At1g32850.1 [Arabidopsis thaliana]
gi|25403162|pir||C86453 CDS protein F9L11.5 [imported] -
Arabidopsis thaliana gi|6910582|gb|AAF31287.1|AC006424_16
CDS [Arabidopsis thaliana]
Length = 887
Score = 119 bits (299), Expect = 4e-26
Identities = 54/67 (80%), Positives = 61/67 (90%)
Frame = -2
Query: 756 DGQSYKYNLYAISNHYGGLGGGHYTAYAKLIDENKWYHFDDSHVTPADEAEIKSSAAYVL 577
DGQSY Y LYAISNHYGGLGGGHYTAYAKL+DE KWY+FDDS V+ +E+EIK+SAAYVL
Sbjct: 811 DGQSYLYELYAISNHYGGLGGGHYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVL 870
Query: 576 FYQRVRS 556
FYQRV+S
Sbjct: 871 FYQRVKS 877
>gb|AAN04210.1| Putative ubiquitin carboxyl terminal hydrolase [Oryza sativa
(japonica cultivar-group)]
Length = 890
Score = 101 bits (251), Expect = 1e-20
Identities = 41/64 (64%), Positives = 55/64 (85%)
Frame = -2
Query: 738 YNLYAISNHYGGLGGGHYTAYAKLIDENKWYHFDDSHVTPADEAEIKSSAAYVLFYQRVR 559
Y LYA+ NHYGG+GGGHY+AYAKL++E+ WYHFDDSHV+ E +I++S+AY+LFY+RV
Sbjct: 809 YELYAVINHYGGMGGGHYSAYAKLVEEDSWYHFDDSHVSSVGEEDIRTSSAYLLFYRRVG 868
Query: 558 S*AC 547
S +C
Sbjct: 869 SSSC 872
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,905,887
Number of Sequences: 1393205
Number of extensions: 12624009
Number of successful extensions: 23806
Number of sequences better than 10.0: 487
Number of HSP's better than 10.0 without gapping: 22900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23647
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
