Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010977A_C01 KMC010977A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_659224.1| NADH dehydrogenase subunit 5 [Taenia solium] gi... 36 0.33
ref|NP_660848.1| hypothetical 43.2 kD protein in ppiA-nirB [Buch... 34 1.3
ref|NP_778028.1| putative ABC transporter [Buchnera aphidicola (... 33 3.7
gb|ZP_00070340.1| hypothetical protein [Oenococcus oeni MCW] 32 6.2
dbj|BAB21494.1| 2-oxoglutarate ferredoxin oxidoreductase alpha s... 32 8.2
>ref|NP_659224.1| NADH dehydrogenase subunit 5 [Taenia solium]
gi|21388752|dbj|BAC00833.1| NADH dehydrogenase subunit 5
[Taenia solium]
Length = 522
Score = 36.2 bits (82), Expect = 0.33
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Frame = -2
Query: 557 FSYICCIT--VHHFFISIWVGNWCFSLETSFFQFGGLYLLSILFTIRWFPSFILAWCFIA 384
F ++CC++ V+ F+S+ NW +L+ + FG + +L+I F+ + SF F+
Sbjct: 17 FCFLCCVSLCVNFNFLSLSGYNWVINLDFDYVTFGIVLMLAICFS---YVSFYTYHYFVG 73
Query: 383 TYMASVLRMQSQL*LRKGSFCRMCILQVLLVQLSLKVEA----RQLRAWELL---ILFLL 225
++ L I+ + +V + + V L WE L FL+
Sbjct: 74 DLVSFELNE---------------IITLFVVVMGILVLTGDFLTTLIFWEYLGVVSFFLI 118
Query: 224 LFF-------AYCVRI*GCLLGHSCSF---GLSVFFFLNYQII*NVSYEILMLFI 90
LF+ + V + G C F GLS F ++NY + +L+LF+
Sbjct: 119 LFYDNFLSLRSSIVTLVSSRFGDVCLFLLIGLSCFIYVNY------LFSMLILFL 167
>ref|NP_660848.1| hypothetical 43.2 kD protein in ppiA-nirB [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gi|25091674|sp|Q8K942|TSGA_BUCAP TsgA protein homolog
gi|21623429|gb|AAM68059.1| hypothetical 43.2 kD protein
in ppiA-nirB [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 387
Score = 34.3 bits (77), Expect = 1.3
Identities = 26/103 (25%), Positives = 47/103 (45%)
Frame = -2
Query: 539 ITVHHFFISIWVGNWCFSLETSFFQFGGLYLLSILFTIRWFPSFILAWCFIATYMASVLR 360
+ V +F+++ +G WCFS FF L +F S +L +CFI Y S L
Sbjct: 243 VLVSNFWMAYMIGMWCFSFIIKFFN------LQRMFIFLTGSSSVLMYCFI--YSKSYLA 294
Query: 359 MQSQL*LRKGSFCRMCILQVLLVQLSLKVEARQLRAWELLILF 231
++ + + G F I +++ SL+ + + L++ F
Sbjct: 295 LKYTI-ISLG-FFSSAIYTIIITLASLETKKPSAKLINLILFF 335
>ref|NP_778028.1| putative ABC transporter [Buchnera aphidicola (Baizongia
pistaciae)] gi|27904300|gb|AAO27133.1| putative ABC
transporter [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 579
Score = 32.7 bits (73), Expect = 3.7
Identities = 18/67 (26%), Positives = 31/67 (45%)
Frame = -1
Query: 510 LGWQLVFLFGNKLFPVWWSLFVIHSFHHKMVSIIHSCMVFYSHIHGFSFENAESIVIEKG 331
+ W+L + L P+ +I F K+ S H +SH++ ++ EN +I + K
Sbjct: 156 ISWKLTII---SLIPMPIMAIIIKRFGKKLYSSYHDAQTTFSHLNNYAQENLNNIHMIKA 212
Query: 330 IFL*NVY 310
L N Y
Sbjct: 213 FGLENYY 219
>gb|ZP_00070340.1| hypothetical protein [Oenococcus oeni MCW]
Length = 432
Score = 32.0 bits (71), Expect = 6.2
Identities = 25/72 (34%), Positives = 39/72 (53%), Gaps = 11/72 (15%)
Frame = -2
Query: 572 ILSS*FSY--ICCITVHHFFISIWVGNWCFSLETS----FFQFGGLYLLSIL-----FTI 426
IL++ FS+ I I + FI +W+G+ SLET F F GL+LL+++ FT+
Sbjct: 128 ILNNYFSWRIIFWIIIPILFIVLWIGSRNISLETKKEDLSFDFIGLFLLALILIGLEFTL 187
Query: 425 RWFPSFILAWCF 390
F + L + F
Sbjct: 188 TQFSKYGLNYRF 199
>dbj|BAB21494.1| 2-oxoglutarate ferredoxin oxidoreductase alpha subunit
[Hydrogenobacter thermophilus]
Length = 607
Score = 31.6 bits (70), Expect = 8.2
Identities = 25/66 (37%), Positives = 33/66 (49%)
Frame = +1
Query: 142 RKKNTLRPKLHEWPNRQPYILTQYAKNKRRNRMRSSHALNCLASTLRLNCTSNTCNIHIL 321
RK N L PKL WP R IL +AK+ RR M S+ LA+ LR + I
Sbjct: 508 RKINALYPKLL-WPLRVD-ILENFAKSCRRIIMPESNYSGQLATVLRAETRIRPISYCIY 565
Query: 322 QKDPFL 339
+ +PF+
Sbjct: 566 RGEPFI 571
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,589,263
Number of Sequences: 1393205
Number of extensions: 11086010
Number of successful extensions: 24321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24316
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
