Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010953A_C01 KMC010953A_c01
(322 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00084352.1| hypothetical protein [Pseudomonas fluorescens... 33 0.96
ref|NP_723789.1| CG5547-PB [Drosophila melanogaster] gi|7298016|... 32 2.8
ref|NP_723791.1| CG5547-PC [Drosophila melanogaster] gi|22946381... 32 2.8
ref|NP_723790.1| CG5547-PD [Drosophila melanogaster] gi|22946380... 32 2.8
ref|NP_609613.1| CG5547-PA [Drosophila melanogaster] gi|7298017|... 32 2.8
>ref|ZP_00084352.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 790
Score = 33.1 bits (74), Expect = 0.96
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 26 IIRDGGSNIYKQAGIGGTIYNYLSPTNINNKSISDDERVPLDQSAISILGGGHHRLFGSS 205
++RDG S +Y IGG I N+++ T++ IS + P GGG R F S
Sbjct: 58 VLRDGASALYGTDAIGGVI-NFITKTSLTEGQISTNYDTPTHS------GGGESRNFSGS 110
>ref|NP_723789.1| CG5547-PB [Drosophila melanogaster] gi|7298016|gb|AAF53257.1|
CG5547-PB [Drosophila melanogaster]
Length = 363
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/86 (25%), Positives = 39/86 (44%)
Frame = +3
Query: 51 FTNKLGLGEPFTITYPQPTSTTKASVMMSGFHWIRAPSVY*AGVITAFSVPRCSITQKRR 230
F N++ +G P+ +T + K V+ G R P G I ++VP K R
Sbjct: 259 FVNEVVIGAPYCVT-EELLEHFKIDVVCHG----RTPIALENGKIDPYAVP------KTR 307
Query: 231 SLWDLVDQGRQKNTQGTCSMVKKHNL 308
++++L+D G + T+ + H L
Sbjct: 308 AIFELIDSGNEMTTERIVERIISHRL 333
>ref|NP_723791.1| CG5547-PC [Drosophila melanogaster] gi|22946381|gb|AAN10827.1|
CG5547-PC [Drosophila melanogaster]
Length = 344
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/86 (25%), Positives = 39/86 (44%)
Frame = +3
Query: 51 FTNKLGLGEPFTITYPQPTSTTKASVMMSGFHWIRAPSVY*AGVITAFSVPRCSITQKRR 230
F N++ +G P+ +T + K V+ G R P G I ++VP K R
Sbjct: 240 FVNEVVIGAPYCVT-EELLEHFKIDVVCHG----RTPIALENGKIDPYAVP------KTR 288
Query: 231 SLWDLVDQGRQKNTQGTCSMVKKHNL 308
++++L+D G + T+ + H L
Sbjct: 289 AIFELIDSGNEMTTERIVERIISHRL 314
>ref|NP_723790.1| CG5547-PD [Drosophila melanogaster] gi|22946380|gb|AAN10826.1|
CG5547-PD [Drosophila melanogaster]
Length = 351
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/86 (25%), Positives = 39/86 (44%)
Frame = +3
Query: 51 FTNKLGLGEPFTITYPQPTSTTKASVMMSGFHWIRAPSVY*AGVITAFSVPRCSITQKRR 230
F N++ +G P+ +T + K V+ G R P G I ++VP K R
Sbjct: 247 FVNEVVIGAPYCVT-EELLEHFKIDVVCHG----RTPIALENGKIDPYAVP------KTR 295
Query: 231 SLWDLVDQGRQKNTQGTCSMVKKHNL 308
++++L+D G + T+ + H L
Sbjct: 296 AIFELIDSGNEMTTERIVERIISHRL 321
>ref|NP_609613.1| CG5547-PA [Drosophila melanogaster] gi|7298017|gb|AAF53258.1|
CG5547-PA [Drosophila melanogaster]
gi|16648514|gb|AAL25522.1| SD08668p [Drosophila
melanogaster]
Length = 206
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/86 (25%), Positives = 39/86 (44%)
Frame = +3
Query: 51 FTNKLGLGEPFTITYPQPTSTTKASVMMSGFHWIRAPSVY*AGVITAFSVPRCSITQKRR 230
F N++ +G P+ +T + K V+ G R P G I ++VP K R
Sbjct: 102 FVNEVVIGAPYCVT-EELLEHFKIDVVCHG----RTPIALENGKIDPYAVP------KTR 150
Query: 231 SLWDLVDQGRQKNTQGTCSMVKKHNL 308
++++L+D G + T+ + H L
Sbjct: 151 AIFELIDSGNEMTTERIVERIISHRL 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,148,066
Number of Sequences: 1393205
Number of extensions: 6494398
Number of successful extensions: 14508
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14503
length of database: 448,689,247
effective HSP length: 82
effective length of database: 334,446,437
effective search space used: 8026714488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
