Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010905A_C01 KMC010905A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180512.1| unknown protein; protein id: At2g29510.1, suppo... 53 3e-06
ref|NP_200710.1| putative protein; protein id: At5g59020.1 [Arab... 48 8e-05
ref|NP_181329.1| hypothetical protein; protein id: At2g37930.1 [... 35 0.67
dbj|BAC42609.1| unknown protein [Arabidopsis thaliana] gi|289510... 35 0.67
gb|AAG10001.1|AF265667_1 RPGR-interacting protein 1 isoform b [H... 32 4.3
>ref|NP_180512.1| unknown protein; protein id: At2g29510.1, supported by cDNA:
gi_20260411 [Arabidopsis thaliana]
gi|25408032|pir||C84697 hypothetical protein At2g29510
[imported] - Arabidopsis thaliana
gi|3980384|gb|AAC95187.1| unknown protein [Arabidopsis
thaliana] gi|20260412|gb|AAM13104.1| unknown protein
[Arabidopsis thaliana]
Length = 839
Score = 52.8 bits (125), Expect = 3e-06
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Frame = -2
Query: 569 FQHGIYSIAYDPSLTLLQAFSISIALLDSKMP---HGLSGSRSSIEGK-IPRETLVAQTE 402
++ G+Y++ Y+ SL+LLQAFSI IA+ + + P + + S +E K E Q E
Sbjct: 750 YREGVYAVEYNTSLSLLQAFSICIAVNEGRNPLIKTTVEPNTSRVEKKAYGGEMSSIQNE 809
Query: 401 ELEAF-GKLE-DIPASFVS-YPPVSPVGRV 321
L++F G +E + PA ++S +PP+SPVGRV
Sbjct: 810 NLKSFSGPIEAEAPARYLSHHPPLSPVGRV 839
>ref|NP_200710.1| putative protein; protein id: At5g59020.1 [Arabidopsis thaliana]
gi|10177630|dbj|BAB10778.1|
gb|AAC95187.1~gene_id:K18B18.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 780
Score = 48.1 bits (113), Expect = 8e-05
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = -2
Query: 572 PFQHGIYSIAYDPSLTLLQAFSISIALLDS-KMPHGLSGSRSSI-EGKIPRETLVAQTEE 399
P + GIYS+AY+ SL+ LQAFSI +AL +S KM + +SS E K+ +T++ ++
Sbjct: 701 PIKEGIYSVAYNSSLSQLQAFSICMALAESRKMSENILEQKSSCDEHKVRGKTVLLPDQD 760
Query: 398 LEAFGKLEDIPASFVSYPP-VSPVGRV 321
G + V Y P SPVGRV
Sbjct: 761 SNPNG-------NTVGYQPRFSPVGRV 780
>ref|NP_181329.1| hypothetical protein; protein id: At2g37930.1 [Arabidopsis
thaliana] gi|25408578|pir||H84798 hypothetical protein
At2g37930 [imported] - Arabidopsis thaliana
Length = 571
Score = 35.0 bits (79), Expect = 0.67
Identities = 25/83 (30%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Frame = -2
Query: 563 HG--IYSIAYDPSLTLLQAFSISIALLDSKMPHGLSGSRSSIEGKIPRETLVAQTEELEA 390
HG ++S+ + S++LL+AF IS+A+ + +S + + E +V L+
Sbjct: 503 HGDELHSVEFGSSISLLEAFFISLAV---------TSHQSWCQEEEEEEVVVIGDCLLK- 552
Query: 389 FGKLEDIPASFVSYPPVSPVGRV 321
+ PA + + PPVSP+GRV
Sbjct: 553 ----RETPAKYATNPPVSPIGRV 571
>dbj|BAC42609.1| unknown protein [Arabidopsis thaliana] gi|28951047|gb|AAO63447.1|
At2g37930 [Arabidopsis thaliana]
Length = 467
Score = 35.0 bits (79), Expect = 0.67
Identities = 25/83 (30%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Frame = -2
Query: 563 HG--IYSIAYDPSLTLLQAFSISIALLDSKMPHGLSGSRSSIEGKIPRETLVAQTEELEA 390
HG ++S+ + S++LL+AF IS+A+ + +S + + E +V L+
Sbjct: 399 HGDELHSVEFGSSISLLEAFFISLAV---------TSHQSWCQEEEEEEVVVIGDCLLK- 448
Query: 389 FGKLEDIPASFVSYPPVSPVGRV 321
+ PA + + PPVSP+GRV
Sbjct: 449 ----RETPAKYATNPPVSPIGRV 467
>gb|AAG10001.1|AF265667_1 RPGR-interacting protein 1 isoform b [Homo sapiens]
Length = 645
Score = 32.3 bits (72), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 370 MSSNFPKASSSSVCATSVSLGIFPSMELLDPES 468
MS +PKA S +C VSL +P E++ E+
Sbjct: 465 MSQKYPKADSEKMCIEIVSLAFYPEAEVMSDEN 497
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,374,200
Number of Sequences: 1393205
Number of extensions: 10827045
Number of successful extensions: 25958
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25932
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
