Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010893A_C01 KMC010893A_c01
(340 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_287096.1| RIKEN cDNA 1110064A23 [Mus musculus] 54 4e-07
dbj|BAA85438.1| similar to RING-H2 finger protein RHA1a (AF07868... 51 4e-06
ref|NP_705317.1| Casein kinase II regulatory subunit, putative [... 50 6e-06
dbj|BAA78501.1| serine repeat antigen [Plasmodium falciparum] 49 1e-05
dbj|BAA78499.1| serine repeat antigen [Plasmodium falciparum] 49 2e-05
>ref|XP_287096.1| RIKEN cDNA 1110064A23 [Mus musculus]
Length = 91
Score = 54.3 bits (129), Expect = 4e-07
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +2
Query: 134 QTILTHCFFFFFFFFFFFFFFFFFFFISF 220
QT+L FFFFFFFFFFFFFFFFFFF F
Sbjct: 42 QTLLFFFFFFFFFFFFFFFFFFFFFFFFF 70
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/34 (67%), Positives = 25/34 (72%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISFPIRVIRAD*FTV 256
FFFFFFFFFFFFFFFFFFF F V+ F+V
Sbjct: 58 FFFFFFFFFFFFFFFFFFFFFFFFFVLPRQGFSV 91
Score = 51.2 bits (121), Expect = 3e-06
Identities = 21/31 (67%), Positives = 24/31 (76%)
Frame = +2
Query: 128 ISQTILTHCFFFFFFFFFFFFFFFFFFFISF 220
+++ L FFFFFFFFFFFFFFFFFFF F
Sbjct: 39 VNKQTLLFFFFFFFFFFFFFFFFFFFFFFFF 69
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 52 FFFFFFFFFFFFFFFFFFFFFF 73
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 51 FFFFFFFFFFFFFFFFFFFFFF 72
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 53 FFFFFFFFFFFFFFFFFFFFFF 74
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 55 FFFFFFFFFFFFFFFFFFFFFF 76
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 54 FFFFFFFFFFFFFFFFFFFFFF 75
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 56 FFFFFFFFFFFFFFFFFFFFFF 77
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 57 FFFFFFFFFFFFFFFFFFFFFF 78
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISF 220
FFFFFFFFFFFFFFFFFFF F
Sbjct: 50 FFFFFFFFFFFFFFFFFFFFFF 71
Score = 45.4 bits (106), Expect = 2e-04
Identities = 20/30 (66%), Positives = 21/30 (69%)
Frame = +2
Query: 131 SQTILTHCFFFFFFFFFFFFFFFFFFFISF 220
SQT + FFFFFFFFFFFFFFFF F
Sbjct: 35 SQTQVNKQTLLFFFFFFFFFFFFFFFFFFF 64
>dbj|BAA85438.1| similar to RING-H2 finger protein RHA1a (AF078683) [Oryza sativa
(japonica cultivar-group)] gi|25553533|dbj|BAC24809.1|
OSJNBa0004I20.4 [Oryza sativa (japonica cultivar-group)]
Length = 224
Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Frame = +2
Query: 143 LTHC---FFFFFFFFFFFFFFFFFFFISF 220
LTH FFFFFFFFFFFFFFFFFFF F
Sbjct: 32 LTHSLNNFFFFFFFFFFFFFFFFFFFFFF 60
Score = 50.1 bits (118), Expect = 7e-06
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFI 214
FFFFFFFFFFFFFFFFFFFI
Sbjct: 42 FFFFFFFFFFFFFFFFFFFI 61
Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISFPIRVI 235
FFFFFFFFFFFFFFFFFF +S+ + I
Sbjct: 43 FFFFFFFFFFFFFFFFFFILSWTTKNI 69
Score = 30.0 bits (66), Expect = 7.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 155 FFFFFFFFFFFFFFFFFFFISFPI 226
FFFFFFFFFF + + FP+
Sbjct: 51 FFFFFFFFFFILSWTTKNIMGFPV 74
>ref|NP_705317.1| Casein kinase II regulatory subunit, putative [Plasmodium
falciparum 3D7] gi|23615562|emb|CAD52554.1| Casein
kinase II regulatory subunit, putative [Plasmodium
falciparum 3D7]
Length = 385
Score = 50.4 bits (119), Expect = 6e-06
Identities = 25/36 (69%), Positives = 27/36 (74%)
Frame = -1
Query: 262 IVNGKLISPDNADGEGNEEEEEEEEEEEEEEEEEEE 155
I N KL+ D + NEEEEEEEEEEEEEEEEEEE
Sbjct: 75 IHNDKLLLDQQRDNDVNEEEEEEEEEEEEEEEEEEE 110
Score = 44.3 bits (103), Expect = 4e-04
Identities = 21/26 (80%), Positives = 22/26 (83%)
Frame = -1
Query: 232 NADGEGNEEEEEEEEEEEEEEEEEEE 155
N + E EEEEEEEEEEEEEEEEEEE
Sbjct: 91 NEEEEEEEEEEEEEEEEEEEEEEEEE 116
Score = 43.9 bits (102), Expect = 5e-04
Identities = 20/30 (66%), Positives = 24/30 (79%)
Frame = -1
Query: 244 ISPDNADGEGNEEEEEEEEEEEEEEEEEEE 155
++ + + E EEEEEEEEEEEEEEEEEEE
Sbjct: 90 VNEEEEEEEEEEEEEEEEEEEEEEEEEEEE 119
Score = 40.0 bits (92), Expect = 0.008
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -1
Query: 259 VNGKLISPDNADGEGNEEEEEEEEEEEEEEEEEEE 155
VN + + + E EEEEEEEEEEEEEEE+E++
Sbjct: 90 VNEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDD 124
Score = 38.1 bits (87), Expect = 0.029
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEEEEEEE+E+++
Sbjct: 99 EEEEEEEEEEEEEEEEEEEEEEDEDDD 125
Score = 37.0 bits (84), Expect = 0.065
Identities = 15/27 (55%), Positives = 22/27 (80%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEEEEEE+E++++
Sbjct: 100 EEEEEEEEEEEEEEEEEEEEEDEDDDD 126
Score = 35.8 bits (81), Expect = 0.14
Identities = 14/27 (51%), Positives = 22/27 (80%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEEEEE+E+++++
Sbjct: 101 EEEEEEEEEEEEEEEEEEEEDEDDDDD 127
Score = 34.7 bits (78), Expect = 0.32
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEEEE+E++++++
Sbjct: 102 EEEEEEEEEEEEEEEEEEEDEDDDDDD 128
Score = 33.5 bits (75), Expect = 0.72
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEEE+E+++++++
Sbjct: 103 EEEEEEEEEEEEEEEEEEDEDDDDDDD 129
Score = 32.3 bits (72), Expect = 1.6
Identities = 11/27 (40%), Positives = 22/27 (80%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEEE+E++++++++
Sbjct: 104 EEEEEEEEEEEEEEEEEDEDDDDDDDD 130
Score = 31.2 bits (69), Expect = 3.6
Identities = 10/27 (37%), Positives = 22/27 (81%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEEE+E+++++++++
Sbjct: 105 EEEEEEEEEEEEEEEEDEDDDDDDDDD 131
Score = 30.0 bits (66), Expect = 7.9
Identities = 9/27 (33%), Positives = 22/27 (81%)
Frame = -1
Query: 235 DNADGEGNEEEEEEEEEEEEEEEEEEE 155
+ + E EEEEEEE+E++++++++++
Sbjct: 106 EEEEEEEEEEEEEEEDEDDDDDDDDDD 132
>dbj|BAA78501.1| serine repeat antigen [Plasmodium falciparum]
Length = 261
Score = 49.3 bits (116), Expect = 1e-05
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +3
Query: 48 YLECPLSGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPS 227
Y++ P +G T ++ + +S + SS S + +SSSSSSSSSSSSSSSSSSS S S
Sbjct: 158 YVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSS 217
Query: 228 ALSGLISLPFTIRA*G 275
+ S S ++ A G
Sbjct: 218 SSSSSSSSSESLPANG 233
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/63 (42%), Positives = 37/63 (57%)
Frame = +3
Query: 66 SGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPSALSGLI 245
S +++ ++ N +S + SS S +SSSSSSSSSSSSSSSSS S P+ S +
Sbjct: 180 SSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANGPDSPTV 239
Query: 246 SLP 254
P
Sbjct: 240 KPP 242
Score = 35.8 bits (81), Expect = 0.14
Identities = 25/68 (36%), Positives = 36/68 (52%)
Frame = +3
Query: 6 IQANDHTSEPYPIGYLECPLSGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSS 185
+ +N T E S +++ ++ + +S + SS S +SSSSSSSSSS
Sbjct: 161 LPSNGTTGEQSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 220
Query: 186 SSSSSSSS 209
SSSSSS S
Sbjct: 221 SSSSSSES 228
Score = 32.3 bits (72), Expect = 1.6
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = +3
Query: 99 NQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPS 227
+ + L K + K + + SSSSSSSSSSSSSSS S S
Sbjct: 148 SNSGSLEKKKYVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSSS 190
Score = 30.0 bits (66), Expect = 7.9
Identities = 19/49 (38%), Positives = 28/49 (56%)
Frame = +3
Query: 90 NNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPSALS 236
NN + S +K+ + + S+ ++ SSSSSSSSSSS S S+ S
Sbjct: 141 NNAISFESNSGSLEKKKYVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSS 189
>dbj|BAA78499.1| serine repeat antigen [Plasmodium falciparum]
Length = 253
Score = 48.9 bits (115), Expect = 2e-05
Identities = 30/63 (47%), Positives = 41/63 (64%)
Frame = +3
Query: 48 YLECPLSGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPS 227
Y++ P +G T ++ + +S + SS S + +SSSSSSSSSSSSSSSSSSS S S
Sbjct: 158 YVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSS 217
Query: 228 ALS 236
+ S
Sbjct: 218 SSS 220
Score = 40.4 bits (93), Expect = 0.006
Identities = 26/63 (41%), Positives = 36/63 (56%)
Frame = +3
Query: 66 SGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPSALSGLI 245
S +++ ++ + S + SS S +SSSSSSSSSSSSSSSSS S P+ S +
Sbjct: 178 SSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANGPDSPTV 237
Query: 246 SLP 254
P
Sbjct: 238 KPP 240
Score = 39.7 bits (91), Expect = 0.010
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 66 SGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPS 227
S +++ ++ + +S + SS S +SSSSSSSSSSSSSSSSSSS P+
Sbjct: 176 SSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPA 229
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/66 (34%), Positives = 34/66 (50%)
Frame = +3
Query: 6 IQANDHTSEPYPIGYLECPLSGATAPFCNNLNQTSGLTKSSFRKQSLHIASSSSSSSSSS 185
+ +N T E S +++ ++ + +S + SS S +SSSSSSSSSS
Sbjct: 161 LPSNGTTGEQSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 220
Query: 186 SSSSSS 203
SSSS S
Sbjct: 221 SSSSES 226
Score = 32.3 bits (72), Expect = 1.6
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = +3
Query: 99 NQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPS 227
+ + L K + K + + SSSSSSSSSSSSSSS S S
Sbjct: 148 SNSGSLEKKKYVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSSS 190
Score = 30.0 bits (66), Expect = 7.9
Identities = 19/49 (38%), Positives = 28/49 (56%)
Frame = +3
Query: 90 NNLNQTSGLTKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSFPSPSALS 236
NN + S +K+ + + S+ ++ SSSSSSSSSSS S S+ S
Sbjct: 141 NNAISFESNSGSLEKKKYVKLPSNGTTGEQSSSSSSSSSSSSSSSSSSS 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,414,319
Number of Sequences: 1393205
Number of extensions: 8778718
Number of successful extensions: 578625
Number of sequences better than 10.0: 7890
Number of HSP's better than 10.0 without gapping: 89403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284739
length of database: 448,689,247
effective HSP length: 88
effective length of database: 326,087,207
effective search space used: 7826092968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
