Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010843A_C01 KMC010843A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA20677.1| Streptococcus pyogenes AMV258, putative [Plasmodi... 33 3.6
>gb|EAA20677.1| Streptococcus pyogenes AMV258, putative [Plasmodium yoelii yoelii]
Length = 784
Score = 33.1 bits (74), Expect = 3.6
Identities = 17/44 (38%), Positives = 22/44 (49%)
Frame = +1
Query: 424 VLSIPISYNLGENYLLP*YHNLFNYLLKTFIFISQVGSKLNHDN 555
+ S P +N+ N LP + NL N L +IFI S NH N
Sbjct: 693 IYSPPAFFNIINNIYLPTFQNLLNTSLNKYIFIKNAKSIYNHLN 736
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,661,666
Number of Sequences: 1393205
Number of extensions: 9982630
Number of successful extensions: 16877
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16873
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
