Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010794A_C01 KMC010794A_c01
(371 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_646912.1| ORFID:MW2095~hypothetical protein, similar to m... 37 0.047
ref|NP_375282.1| hypothetical protein, similar to multidrug tran... 37 0.047
dbj|BAB83936.1| hypothethical protein, similar to BAB43261.1 of ... 37 0.047
pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans 35 0.23
ref|NP_245372.1| PstC [Pasteurella multocida] gi|20139714|sp|Q9C... 35 0.31
>ref|NP_646912.1| ORFID:MW2095~hypothetical protein, similar to multidrug transporter
[Staphylococcus aureus subsp. aureus MW2]
gi|21205266|dbj|BAB95960.1| MW2095 [Staphylococcus
aureus subsp. aureus MW2]
Length = 447
Score = 37.4 bits (85), Expect = 0.047
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = -2
Query: 301 EKIKKEK*DSHVDYSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVVSRIK 122
E + K K D+ +L + F L+ F+ L ++ F+S F+L I++ + LF+V +
Sbjct: 187 ETVAKSKFDTK-GLTLFYVFIGLIMFALLNQQLLLLNFLS-FILAIVVAMCLFKVEKHVS 244
Query: 121 SLYFVVVLLY*DIVLYFFFSLVSGDCGHSFEI 26
S + VV I L F L++ C F +
Sbjct: 245 SPFLPVVEFNRSITLVFITDLLTAICLMGFNL 276
>ref|NP_375282.1| hypothetical protein, similar to multidrug transporter
[Staphylococcus aureus subsp. aureus N315]
gi|25506852|pir||D90012 hypothetical protein SA1972
[imported] - Staphylococcus aureus (strain N315)
gi|13701969|dbj|BAB43261.1| SA1972 [Staphylococcus
aureus subsp. aureus N315]
Length = 447
Score = 37.4 bits (85), Expect = 0.047
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = -2
Query: 301 EKIKKEK*DSHVDYSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVVSRIK 122
E + K K D+ +L + F L+ F+ L ++ F+S F+L I++ + LF+V +
Sbjct: 187 ETVAKSKFDTK-GLTLFYVFIGLIMFALLNQQLLLLNFLS-FILAIVVAMCLFKVEKHVS 244
Query: 121 SLYFVVVLLY*DIVLYFFFSLVSGDCGHSFEI 26
S + VV I L F L++ C F +
Sbjct: 245 SPFLPVVEFNRSITLVFITDLLTAICLMGFNL 276
>dbj|BAB83936.1| hypothethical protein, similar to BAB43261.1 of S. aureus N315
[Staphylococcus aureus]
Length = 447
Score = 37.4 bits (85), Expect = 0.047
Identities = 26/92 (28%), Positives = 45/92 (48%)
Frame = -2
Query: 301 EKIKKEK*DSHVDYSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVVSRIK 122
E + K K D+ +L + F L+ F+ L ++ F+S F+L I++ + LF+V +
Sbjct: 187 ETVAKSKFDTK-GLTLFYVFIGLIMFALLNQQLLLLNFLS-FILAIVVAMCLFKVEKHVS 244
Query: 121 SLYFVVVLLY*DIVLYFFFSLVSGDCGHSFEI 26
S + VV I L F L++ C F +
Sbjct: 245 SPFLPVVEFNRSITLVFITDLLTAICLMGFNL 276
>pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans
Length = 836
Score = 35.0 bits (79), Expect = 0.23
Identities = 19/68 (27%), Positives = 35/68 (50%)
Frame = -2
Query: 262 YSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVVSRIKSLYFVVVLLY*DI 83
Y +F+F + + F F F F+ +F+ I + IF+F + L+F+ + +Y
Sbjct: 735 YFFLFYFLFFI-YLFFFKFFFKFFFLFLFIFFIFMFIFIFIFI-----LFFIFIFIYFYF 788
Query: 82 VLYFFFSL 59
+L+FF L
Sbjct: 789 ILFFFIYL 796
Score = 32.3 bits (72), Expect = 1.5
Identities = 22/85 (25%), Positives = 38/85 (43%)
Frame = -2
Query: 313 WRMSEKIKKEK*DSHVDYSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVV 134
W +EK + +++ F+FY F F F F + F F + +F+F +
Sbjct: 709 WEATEKNFNFNFTFNFNFNFNFNFYFYF-FLFYFLFFIYLFFFKFFFKFFFLFLFIFFIF 767
Query: 133 SRIKSLYFVVVLLY*DIVLYFFFSL 59
I F+ +L + I +YF+F L
Sbjct: 768 MFI--FIFIFILFFIFIFIYFYFIL 790
Score = 31.6 bits (70), Expect = 2.6
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -2
Query: 262 YSLVFHFYHLVSFSFLFSPFTIVLFVSVFVLGILIVIFLFRVVSRIKSLYFVVVLLY*DI 83
Y F F+ F FLF F I +F+ +F+ IL IF+F +YF +L + I
Sbjct: 746 YLFFFKFFFKFFFLFLFI-FFIFMFIFIFIF-ILFFIFIF--------IYFYFILFF-FI 794
Query: 82 VLYFF 68
L+FF
Sbjct: 795 YLFFF 799
>ref|NP_245372.1| PstC [Pasteurella multocida] gi|20139714|sp|Q9CNJ5|PSTC_PASMU
Phosphate transport system permease protein pstC
gi|12720688|gb|AAK02519.1| PstC [Pasteurella multocida]
Length = 320
Score = 34.7 bits (78), Expect = 0.31
Identities = 21/48 (43%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Frame = -2
Query: 271 HVDYSLVFHFYHLVSFSFLFS--PFTIVLFVSVFVLGILIVIFLFRVV 134
H+ SL+ F L FS+LFS PF I LF + VL I+I+ F+ V+
Sbjct: 145 HIQPSLIEWFGDLPVFSYLFSGAPFGIGLFTAGLVLAIMIIPFIAAVM 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,493,097
Number of Sequences: 1393205
Number of extensions: 5613075
Number of successful extensions: 22250
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 20137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22101
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
