Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010731A_C01 KMC010731A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_031994.1| Ewing sarcoma homolog [Mus musculus] gi|2500583... 34 1.7
dbj|BAB31732.1| unnamed protein product [Mus musculus] 34 1.7
gb|EAA42686.1| GLP_81_32387_33526 [Giardia lamblia ATCC 50803] 33 3.0
gb|AAG09036.1|AF254087_1 EWS/ZSG fusion protein long A isoform [... 33 3.9
emb|CAA70044.1| EWS [Homo sapiens] 33 3.9
>ref|NP_031994.1| Ewing sarcoma homolog [Mus musculus] gi|2500583|sp|Q61545|EWS_MOUSE
RNA-binding protein EWS gi|1083465|pir||A55726
RNA-binding protein Ews - mouse
gi|488513|emb|CAA55815.1| EWS [Mus musculus]
Length = 655
Score = 33.9 bits (76), Expect = 1.7
Identities = 21/78 (26%), Positives = 37/78 (46%)
Frame = +2
Query: 95 FPSPSFFRSSPSQYGRRFHTNSNTHSAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISI 274
+P S+ S P+ Y + ++ NT+ PSS Y + ++ + + P TS PQ
Sbjct: 190 YPPTSYSSSQPTSYDQSSYSQQNTYGQPSS-YGQQSSYGQQSSYGQQPPTS--YPPQTGS 246
Query: 275 VSDKPSAISKNNLNWLSQ 328
S PS S+ + ++ Q
Sbjct: 247 YSQAPSQYSQQSSSYGQQ 264
>dbj|BAB31732.1| unnamed protein product [Mus musculus]
Length = 655
Score = 33.9 bits (76), Expect = 1.7
Identities = 21/78 (26%), Positives = 37/78 (46%)
Frame = +2
Query: 95 FPSPSFFRSSPSQYGRRFHTNSNTHSAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISI 274
+P S+ S P+ Y + ++ NT+ PSS Y + ++ + + P TS PQ
Sbjct: 190 YPPTSYSSSQPTSYDQSSYSQQNTYGQPSS-YGQQSSYGQQSSYGQQPPTS--YPPQTGS 246
Query: 275 VSDKPSAISKNNLNWLSQ 328
S PS S+ + ++ Q
Sbjct: 247 YSQAPSQYSQQSSSYGQQ 264
>gb|EAA42686.1| GLP_81_32387_33526 [Giardia lamblia ATCC 50803]
Length = 379
Score = 33.1 bits (74), Expect = 3.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 170 SAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISIVSDKPSAISKNNL 313
+ PSST P+G+ + ++ T SS+ P + SD+P + ++L
Sbjct: 125 TTPSSTQPAGLTTQPNLQLGTATTASSSSVPHLMPASDRPEVVLTDSL 172
>gb|AAG09036.1|AF254087_1 EWS/ZSG fusion protein long A isoform [Homo sapiens]
Length = 713
Score = 32.7 bits (73), Expect = 3.9
Identities = 20/78 (25%), Positives = 37/78 (46%)
Frame = +2
Query: 95 FPSPSFFRSSPSQYGRRFHTNSNTHSAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISI 274
+P S+ + P+ Y + ++ NT+ PSS Y + ++ + + P TS PQ
Sbjct: 190 YPPTSYSSTQPTSYDQSSYSQQNTYGQPSS-YGQQSSYGQQSSYGQQPPTS--YPPQTGS 246
Query: 275 VSDKPSAISKNNLNWLSQ 328
S PS S+ + ++ Q
Sbjct: 247 YSQAPSQYSQQSSSYGQQ 264
>emb|CAA70044.1| EWS [Homo sapiens]
Length = 353
Score = 32.7 bits (73), Expect = 3.9
Identities = 20/78 (25%), Positives = 37/78 (46%)
Frame = +2
Query: 95 FPSPSFFRSSPSQYGRRFHTNSNTHSAPSSTYPSGIRHRRRVKFSRTPTTSSNEKPQISI 274
+P S+ + P+ Y + ++ NT+ PSS Y + ++ + + P TS PQ
Sbjct: 198 YPPTSYSSTQPTSYDQSSYSQQNTYGQPSS-YGQQSSYGQQSSYGQQPPTS--YPPQTGS 254
Query: 275 VSDKPSAISKNNLNWLSQ 328
S PS S+ + ++ Q
Sbjct: 255 YSQAPSQYSQQSSSYGQQ 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,569,496
Number of Sequences: 1393205
Number of extensions: 12144668
Number of successful extensions: 39227
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 37276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39193
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
