Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010709A_C01 KMC010709A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179983.1| putative eukaryotic initiation factor 4, eIF4; ... 33 2.2
gb|AAL32572.1| putative eukaryotic initiation factor 4, eIF4 [Ar... 33 2.2
dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protei... 32 5.0
ref|NP_058383.1| orf; hypothetical protein [Salmonella typhi] gi... 32 5.0
gb|AAK62591.1| AT5g57870/MTI20_13 [Arabidopsis thaliana] gi|1521... 32 5.0
>ref|NP_179983.1| putative eukaryotic initiation factor 4, eIF4; protein id:
At2g24050.1, supported by cDNA: gi_17064835 [Arabidopsis
thaliana] gi|25370720|pir||A84632 probable eukaryotic
initiation factor 4, eIF4 [imported] - Arabidopsis
thaliana gi|3738332|gb|AAC63673.1| putative eukaryotic
initiation factor 4, eIF4 [Arabidopsis thaliana]
Length = 747
Score = 32.7 bits (73), Expect = 2.2
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -2
Query: 489 LQVITSSASGQAVVDSQASDVEACRSVL 406
++ + SGQ+V+DSQA +VEAC+S+L
Sbjct: 720 IKSVRECPSGQSVLDSQAVEVEACQSLL 747
>gb|AAL32572.1| putative eukaryotic initiation factor 4, eIF4 [Arabidopsis
thaliana] gi|25083638|gb|AAN72098.1| putative eukaryotic
initiation factor 4, eIF4 [Arabidopsis thaliana]
Length = 747
Score = 32.7 bits (73), Expect = 2.2
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -2
Query: 489 LQVITSSASGQAVVDSQASDVEACRSVL 406
++ + SGQ+V+DSQA +VEAC+S+L
Sbjct: 720 IKSVRECPSGQSVLDSQAVEVEACQSLL 747
>dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 751
Score = 31.6 bits (70), Expect = 5.0
Identities = 11/27 (40%), Positives = 23/27 (84%)
Frame = -2
Query: 489 LQVITSSASGQAVVDSQASDVEACRSV 409
++++ SS G++++ SQA+D+EACR++
Sbjct: 725 VRIVESSEQGKSLLASQAADIEACRNL 751
>ref|NP_058383.1| orf; hypothetical protein [Salmonella typhi]
gi|7800412|gb|AAF70008.1|AF250878_169 orf; hypothetical
protein [Salmonella typhi]
Length = 132
Score = 31.6 bits (70), Expect = 5.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 82 FLFFFLIFLTD*LLNWSGHKCHVG 11
FLF F +F + WSGH CH+G
Sbjct: 58 FLFIFSLFPQNSRAAWSGHDCHIG 81
>gb|AAK62591.1| AT5g57870/MTI20_13 [Arabidopsis thaliana]
gi|15215895|gb|AAK91491.1| AT5g57870/MTI20_13
[Arabidopsis thaliana]
Length = 81
Score = 31.6 bits (70), Expect = 5.0
Identities = 11/27 (40%), Positives = 23/27 (84%)
Frame = -2
Query: 489 LQVITSSASGQAVVDSQASDVEACRSV 409
++++ SS G++++ SQA+D+EACR++
Sbjct: 55 VRIVESSEQGKSLLASQAADIEACRNL 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,566,518
Number of Sequences: 1393205
Number of extensions: 7776098
Number of successful extensions: 15058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15055
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
