Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010685A_C01 KMC010685A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK52550.1|AC079853_3 Unknown protein [Oryza sativa] 67 2e-10
ref|NP_190606.1| putative protein; protein id: At3g50370.1 [Arab... 52 7e-06
ref|NP_602098.1| putative gluconate permease [Corynebacterium gl... 37 0.23
pir||C61615 sericin MG-2 - greater wax moth (fragments) 35 0.88
ref|NP_701280.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.6
>gb|AAK52550.1|AC079853_3 Unknown protein [Oryza sativa]
Length = 2346
Score = 67.4 bits (163), Expect = 2e-10
Identities = 34/76 (44%), Positives = 47/76 (61%)
Frame = -1
Query: 635 SHPSQQINVSNQQYDHSSGHANYQRGGASQRNSSGGEWSHRRMGYQGRNQNMGADKNFSS 456
S P Q + S QQY H + + +R +Q+ + EW RR GYQGRNQN G+DKN +
Sbjct: 2221 SKPHQSSSSSGQQYQHQVNNQD-RRSRVTQKTGAVNEWQ-RRSGYQGRNQNSGSDKNLGT 2278
Query: 455 SKVKQIYVAKQTISGG 408
++KQIYVAK + + G
Sbjct: 2279 GRMKQIYVAKSSSASG 2294
>ref|NP_190606.1| putative protein; protein id: At3g50370.1 [Arabidopsis thaliana]
gi|11357346|pir||T45583 hypothetical protein F11C1.210 -
Arabidopsis thaliana gi|6523048|emb|CAB62316.1| putative
protein [Arabidopsis thaliana]
Length = 2152
Score = 52.0 bits (123), Expect = 7e-06
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -1
Query: 647 PAFKSHPSQQINVSNQQYDHSSGHANYQRGGASQRNSSGGEWSHRRMGYQGRNQNMGADK 468
P FK P QQ S+Q+ + S H GG S + +RR GY GRNQ M ++
Sbjct: 2064 PGFKP-PQQQQQQSSQEKNTQSQHV----GGPSHHHQHQHH-QNRRSGYHGRNQPMARER 2117
Query: 467 NF-SSSKVKQIYVAKQTISGGASTVS 393
F ++ KVKQIYVAKQT + AS S
Sbjct: 2118 GFPNNPKVKQIYVAKQTGNSCASASS 2143
>ref|NP_602098.1| putative gluconate permease [Corynebacterium glutamicum ATCC 13032]
gi|12657271|emb|CAC27825.1| gluconate permease
[Corynebacterium glutamicum] gi|21325681|dbj|BAC00302.1|
H+/gluconate symporter and related permeases
[Corynebacterium glutamicum ATCC 13032]
Length = 463
Score = 37.0 bits (84), Expect = 0.23
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = +1
Query: 217 PSFINSSLQNDTEPINPSNQVSTTKVLSIPSAAFIRNTGVESAIAS 354
P ++ Q D +P NP+N VS +L IP NTG A+++
Sbjct: 217 PDLLSGGAQEDDQPQNPANAVSIIVILLIPMLLIFGNTGTSMAVSA 262
>pir||C61615 sericin MG-2 - greater wax moth (fragments)
Length = 286
Score = 35.0 bits (79), Expect = 0.88
Identities = 24/79 (30%), Positives = 35/79 (43%)
Frame = -1
Query: 635 SHPSQQINVSNQQYDHSSGHANYQRGGASQRNSSGGEWSHRRMGYQGRNQNMGADKNFSS 456
S S N S ++SSG ++ G+S NSSG S+ G N + G+ N SS
Sbjct: 11 SGSSSSNNSSGSSSNNSSGSSSNNSSGSSSNNSSGSSSSNNSSG-SSSNNSSGSSSNSSS 69
Query: 455 SKVKQIYVAKQTISGGAST 399
+ + SG +ST
Sbjct: 70 TNNSSGSSSTNNSSGSSST 88
>ref|NP_701280.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496347|gb|AAN36004.1|AE014842_26 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 823
Score = 33.5 bits (75), Expect = 2.6
Identities = 32/149 (21%), Positives = 75/149 (49%), Gaps = 4/149 (2%)
Frame = +3
Query: 3 KNINKFNMGQKKEFYNSRNPGEKKSKLTFLKTDTSLIIMERIYEDELWIFSTQKPINNWP 182
KN N N+ +K + Y++ + K +T ++ S ++ I+++E + +KP N +
Sbjct: 500 KNTNLDNV-KKYKIYSTYSEESGKYHITS-ESKISNESLDNIHKEEQLYHTYKKPNNKYM 557
Query: 183 GFMPLKEYKGSTKLH*FITAKRHRAHQSLQPGEHNKSAINPFSSFHQEH----RCRICYS 350
P+K Y+ K H K++++++ + G++N++ + + S + + +C+ +
Sbjct: 558 INEPIKRYRMKIKTH-----KKNQSNE--ENGKYNENRKSSYESSYYDKKYVMKCKEIKN 610
Query: 351 QQKSQSNTEAALHS*HC*CPTTNSLFSHI 437
QK++S + ++L S TN H+
Sbjct: 611 NQKNKSYSISSLSSQVSLNQQTNKKIDHV 639
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,920,058
Number of Sequences: 1393205
Number of extensions: 12057654
Number of successful extensions: 29507
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 28230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29451
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
