Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010678A_C01 KMC010678A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191811.1| putative protein; protein id: At3g62520.1 [Arab... 74 9e-13
gb|AAL31650.1|AC079179_5 Putative Tam3-like transposon protein [... 72 5e-12
ref|NP_175378.1| hypothetical protein; protein id: At1g49550.1 [... 72 5e-12
gb|AAM97760.1| putative transposase [Oryza sativa (japonica cult... 72 6e-12
ref|NP_683670.1| transposase-related; protein id: At3g43686.1 [A... 71 8e-12
>ref|NP_191811.1| putative protein; protein id: At3g62520.1 [Arabidopsis thaliana]
gi|11357980|pir||T48044 hypothetical protein T12C14.220
- Arabidopsis thaliana gi|7340723|emb|CAB82966.1|
putative protein [Arabidopsis thaliana]
Length = 705
Score = 74.3 bits (181), Expect = 9e-13
Identities = 39/71 (54%), Positives = 53/71 (73%)
Frame = -2
Query: 556 LIAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDIEE 377
L+A++VLA+PVS+VASESAFST GR+L+ YRS L+P VEALV Q+W R+ S E
Sbjct: 614 LMAREVLAIPVSSVASESAFSTGGRILDQYRSCLTPDMVEALVLTQDWLRASLRS----E 669
Query: 376 LLEEFEKLEQE 344
++ +KLE+E
Sbjct: 670 AMKSLDKLEEE 680
>gb|AAL31650.1|AC079179_5 Putative Tam3-like transposon protein [Oryza sativa]
Length = 737
Score = 72.0 bits (175), Expect = 5e-12
Identities = 36/71 (50%), Positives = 53/71 (73%)
Frame = -2
Query: 553 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDIEEL 374
+A D+LA+P+++VASESAFS GR L+++R+SL+P+ VE LVCA +W R G S +EE
Sbjct: 653 LACDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRMVERLVCANDWLRGGNYVS-VEED 711
Query: 373 LEEFEKLEQEM 341
E+ LE+E+
Sbjct: 712 SEQMALLEEEL 722
>ref|NP_175378.1| hypothetical protein; protein id: At1g49550.1 [Arabidopsis
thaliana] gi|5430746|gb|AAD43146.1|AC007504_1
Hypothetical Protein [Arabidopsis thaliana]
Length = 258
Score = 72.0 bits (175), Expect = 5e-12
Identities = 34/70 (48%), Positives = 51/70 (72%)
Frame = -2
Query: 553 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDIEEL 374
+A DVL++P++TVASES+FS VL+ YRSSL P+ ++AL+C +NW R P + EE+
Sbjct: 184 MACDVLSIPITTVASESSFSIGSGVLSKYRSSLLPENIQALICTRNWLRGFPKEGEEEEV 243
Query: 373 LEEFEKLEQE 344
EE E+ ++E
Sbjct: 244 EEEKEEEKEE 253
>gb|AAM97760.1| putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 997
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = -2
Query: 553 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRS---GPLSSDI 383
+A+DV+A+ +STVASESAFS GRV+ +RSSL P+ +EALVC ++W R+ GP I
Sbjct: 907 LARDVMAVQISTVASESAFSAGGRVVGPFRSSLHPEMIEALVCTKDWIRASRKGPFKDKI 966
Query: 382 EELLEEFEKLEQEMEPSTQPIQDESSDA 299
+L+E + ++ E + + DE A
Sbjct: 967 ATILDELD-VQIEDKDGAKTDNDEEGQA 993
>ref|NP_683670.1| transposase-related; protein id: At3g43686.1 [Arabidopsis thaliana]
Length = 860
Score = 71.2 bits (173), Expect = 8e-12
Identities = 40/101 (39%), Positives = 58/101 (56%), Gaps = 2/101 (1%)
Frame = -2
Query: 553 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDIEEL 374
+A D+L++P+STVASES FS RVL+ YRS L P+ V+AL+C +NW + +
Sbjct: 576 MACDILSIPISTVASESLFSIGTRVLSKYRSRLLPRNVQALICNRNWLKGFESYEN---- 631
Query: 373 LEEFEKLEQEME--PSTQPIQDESSDAESEQLELLEAFLSY 257
EE+EK + E E PS Q + D++ + L A Y
Sbjct: 632 -EEYEKFDAEDETLPSFQSLVDDADGCSDSTISQLRAISDY 671
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,182,200
Number of Sequences: 1393205
Number of extensions: 7887597
Number of successful extensions: 32436
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 28001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31499
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
